Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0240 ATGCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCTCCATTGGTTTGTTCCCTCAATCAAGAAGGACTATATCTTCAGCGAGTCAAACTCGGTCTCTCCGATCCCACTCACTCCCTCTCTTCATGGAACCCACGCGACGACACTCCCTGCAACTGGTCCGGCGTTACTTGCGATTCCGTTACTCGTTCTGTTATCGCCCTCGACCTCTCCGATTTTCAGATCGCCGGACAGTTTCCCACTTTCGTTTGTCGTCTTCCTTCTCTTTCTTCACTATCTCTTTCCAATAACGCTATTAACGCTTCTCTTCCTGACGATGTCGCTTCCTGTTCTAGCCTCCAGTGGCTTAACTTGTCTCAGAATCTTCTTGCTGGTTCTATTCCCGATGCGATTTCCAAGATCTCGAATCTTCGCTCACTGGATCTCTCTGGAAACAACTTTTCCGGGGAGATTCCGACCAGTTTCGGTGGGTTTCAGCGACTTGAGACGCTGAATTTAGTTGATAATCTTTTGGATGGAACTATTCCGGGGAGTTTGGGTAACATTTCGAGTTTGAAAGAGCTTCAACTCGCTTACAATCCGTTTACGCGGAGTGAGATACCGAGTGCATTCGGGAACTTGACGAACCTGGAGGTTCTCTGGCTTGCTAACTGTAATCTTGTCGGTCAGATTCCGGCAACTGTTGGCCGGATGACTCGGCTTACGAATCTTGACTTGTCCAATAATAGACTTAGTGGGTCGATTCCGGTTTCACTCACTCAAATGAAAAGTTTAGTTCAAATTGAACTATTTAACAACTCGCTCTCCGGGGAGTTGCCTTTGGGACTGTCTAATTTAACTGCACTTCGAAGAATTGATGTGTCGATGAATCACTTGACTGGAACAATTCCGGATGAACTGTGTGCATTACAGCTTGAGTCGCTAAATTTGTTCGAGAATCGATTGGAAGGGCCTTTGCCGGAGAGTGTCGTTAATTCCCCTTACTTGAATGAGCTCAAATTGTTTAACAACAAGCTTAGTGGACAGTTACCGAGTAAACTCGGCCAAAACTCGCCATTAGTGCATCTTGATGTTTCATACAACGGATTTTCTGGCGGAATCCCTGAAAACTTGTGTGCAAAAGGGACATTGGAAGAACTTATATTGATTTACAATTCGTTTTCCGGAAGAATCCCGGCAAGTCTTGGAAAATGCAGCAGCTTAAGCCGGATTCGAATGAGGAACAACAGACTCTCGGGTGCGGTTCCTGATGAATTCTGGGGTCTGCCCAATGTCTATTTGCTTGAGCTCGTTGAGAATTCTCTTTCTGGGTCTATTTCTTCGATGATATCTAGCGCTAAGAATCTCTCTATTTTGATGATCTCAGAAAATCAATTTTCAGGGTTAATTCCTTCCGAGATTGGATCGTTAAGCAATCTGACTGAACTTTCAGGTAGTGACAATATGTTTTCCGGTCGAATCCCGGGAACTTTGGTAAAGTTAAACTTGTTGAGTACACTCGATCTAAGCAAGAACAAGCTTTCTGGTGAATTGCCAATGGGAATTGGAGCTTTGAAAAGGCTAAACGAGTTAAATTTAGCAAACAACAGGCTATCTGGCAATATCCCGAGTGAAATTGGAAGCCTACCTGTGCTTAATTATCTCGATCTTTCAAGTAACCATCTCAGTGGAAGTATACCCCTTGAATTGCAGAATTTGAAACTGAATTCGTTAAATCTGTCGAACAATCGGTTATCAGGAGTACTTCCTCCTCTTTATGCAGAGGATATTTACAGAGATAGCTTTCTGGGTAATCCAGGTTTGTGCAATAACGACCCAAGTCTTTGTCCTCATGTTGGAAAAGGCAAAAACCAAGGCTATTGGCTTCTCAGATCCATTTTTCTACTTGCTATCATTGTTTTTTTTGTTGGGGTCATTTGGTTTTTCTTGAAGTACAAGGAATTCAAGAAGAGTAAAAAAGGAATTGCCATGTCCAAGTGGAAATCATTTCATAAGCATGGTTTTAGTGAATATGAAATAGCAGATTGCCTCAGTGAAGACAAAGTCATTGGAAGTGGAGCATCTGGCAAAGTGTACAAAGTTGTGCTAAAAAACGGCGAGATCGTGGCGGTGAAGAAGCTATGGCAAGGAGCAAGAAAAGAGGACACAAGTTTGGATTCAGAGAAAGATGGATTTGAAGCTGAAGTTGAGACTTTAGGGAAGATCCGTCACAAGAATATTGTAAGGTTATGGTGCTGCTGCAACACAGGCAACTGCAAGCTGCTTGTTTATGAGTACATGCCTAATGGAAGCTTGGGAGATTTGTTACACGGCAGCAAAAAGCGCTTTCTGGATTGGCCTACAAGGTATAAAGTAGTTTTGGATGCAGCTGAAGGGCTTTCTTACTTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGATATTAAATCCAACAATATATTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCTGACTTTGGATTGGCAAAGTTTTTGAACGCTGGCAAGGGATCAGAATCGATGTCTGTCATTGCCGGTTCTTGTGGTTATATTGCACCAGAATATGCTTATACTTTAAGAGTAAACGAAAAGAGTGACATCTACAGCTTTGGGGTGGTGATTTTAGAGCTAGTGACAGGGCGGCCTCCAAATGATCCAGAATTTGGGGATAGAGACTTGACAAAGTGGGTCTATGCCACCGTCGACGGTAGAGGACTCGATCGAGTGATTGATCCGAAACTCGGTTCTGAATACAAGGAAGAAATATACAGAGTCCTTGACGTGGGACTGCTTTGCACAAGCTCACTTCCCATCAACCGCCCTTCAATGAGACGAGTCGTTAAACTGCTGCAGGAGGCTGCCACAGAAACCAGACCCGCCATTGTTAAAAGGGAACCCAAACTTTCTCCATATTTCTCCTAG 2940 43.47 MPSLLLLLLLLLLLLLSSPLVCSLNQEGLYLQRVKLGLSDPTHSLSSWNPRDDTPCNWSGVTCDSVTRSVIALDLSDFQIAGQFPTFVCRLPSLSSLSLSNNAINASLPDDVASCSSLQWLNLSQNLLAGSIPDAISKISNLRSLDLSGNNFSGEIPTSFGGFQRLETLNLVDNLLDGTIPGSLGNISSLKELQLAYNPFTRSEIPSAFGNLTNLEVLWLANCNLVGQIPATVGRMTRLTNLDLSNNRLSGSIPVSLTQMKSLVQIELFNNSLSGELPLGLSNLTALRRIDVSMNHLTGTIPDELCALQLESLNLFENRLEGPLPESVVNSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGGIPENLCAKGTLEELILIYNSFSGRIPASLGKCSSLSRIRMRNNRLSGAVPDEFWGLPNVYLLELVENSLSGSISSMISSAKNLSILMISENQFSGLIPSEIGSLSNLTELSGSDNMFSGRIPGTLVKLNLLSTLDLSKNKLSGELPMGIGALKRLNELNLANNRLSGNIPSEIGSLPVLNYLDLSSNHLSGSIPLELQNLKLNSLNLSNNRLSGVLPPLYAEDIYRDSFLGNPGLCNNDPSLCPHVGKGKNQGYWLLRSIFLLAIIVFFVGVIWFFLKYKEFKKSKKGIAMSKWKSFHKHGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEIVAVKKLWQGARKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGSKKRFLDWPTRYKVVLDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDRDLTKWVYATVDGRGLDRVIDPKLGSEYKEEIYRVLDVGLLCTSSLPINRPSMRRVVKLLQEAATETRPAIVKREPKLSPYFS 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2264648 2267874 - ClG42_02g0024000.10 Clacu02g0240 242308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0240 979 PRINTS Leucine-rich repeat signature 547 560 - -
Clacu02g0240 979 PRINTS Leucine-rich repeat signature 239 252 - -
Clacu02g0240 979 SMART LRR_typ_2 187 211 IPR003591 -
Clacu02g0240 979 SMART LRR_typ_2 139 162 IPR003591 -
Clacu02g0240 979 SMART LRR_typ_2 284 308 IPR003591 -
Clacu02g0240 979 SMART LRR_typ_2 91 115 IPR003591 -
Clacu02g0240 979 SMART LRR_typ_2 236 260 IPR003591 -
Clacu02g0240 979 SMART LRR_typ_2 523 547 IPR003591 -
Clacu02g0240 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0240 979 ProSiteProfiles Protein kinase domain profile. 682 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0240 979 ProSiteProfiles Leucine-rich repeat profile. 238 260 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Gene3D Phosphorylase Kinase; domain 1 664 764 - -
Clacu02g0240 979 Gene3D Ribonuclease Inhibitor 23 201 IPR032675 -
Clacu02g0240 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 765 972 - -
Clacu02g0240 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 187 - -
Clacu02g0240 979 FunFam Leucine-rich receptor-like protein kinase family protein 205 303 - -
Clacu02g0240 979 SUPERFAMILY L domain-like 358 608 - -
Clacu02g0240 979 Gene3D Transferase(Phosphotransferase) domain 1 765 973 - -
Clacu02g0240 979 FunFam Receptor-like protein kinase HSL1 665 764 - -
Clacu02g0240 979 Pfam Protein kinase domain 684 892 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0240 979 PANTHER RECEPTOR-LIKE PROTEIN 55 382 956 - -
Clacu02g0240 979 Gene3D Ribonuclease Inhibitor 270 617 IPR032675 -
Clacu02g0240 979 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524(InterPro)
Clacu02g0240 979 SMART serkin_6 682 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0240 979 SUPERFAMILY Protein kinase-like (PK-like) 675 956 IPR011009 -
Clacu02g0240 979 Pfam Leucine rich repeat 92 152 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 SUPERFAMILY L domain-like 39 368 - -
Clacu02g0240 979 Pfam Leucine Rich Repeat 572 589 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 526 547 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 453 475 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 358 377 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 189 212 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 287 308 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 550 571 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 238 259 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Pfam Leucine Rich Repeat 502 522 IPR001611 GO:0005515(InterPro)
Clacu02g0240 979 Gene3D Ribonuclease Inhibitor 202 262 IPR032675 -
Clacu02g0240 979 FunFam Receptor-like protein kinase HSL1 309 616 - -
Clacu02g0240 979 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2411 Clacu-Chr1:34704091 Clacu02g0240 Clacu-Chr2:2264648 3.60E-131 dispersed
Clacu02g0240 Clacu-Chr2:2264648 Clacu03g0792 Clacu-Chr3:8907345 3.30E-169 dispersed
Clacu11g0187 Clacu-Chr11:1566918 Clacu02g0240 Clacu-Chr2:2264648 2.60E-18 transposed
Clacu02g0240 Clacu-Chr2:2264648 Clacu08g1020 Clacu-Chr8:20200202 7.20E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73313 PF00069 Pkinase 1.30E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0240 - - - 0.0