Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g0248 | ATGATCTTTAGTTGTGGTCATCGAGATTACTCGTTTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG | 489 | 41.92 | MIFSCGHRDYSFIICDNAKEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGGDAYIEFEDEDIDKI | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2317281 | 2318229 | + | ClG42_02g0024800.10 | Clacu02g0248 | 242316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g0248 | 162 | Hamap | Translation initiation factor 1A [eif1a]. | 32 | 126 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Clacu02g0248 | 162 | Pfam | Translation initiation factor 1A / IF-1 | 48 | 109 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Clacu02g0248 | 162 | ProSiteProfiles | S1 domain IF1 type profile. | 38 | 112 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Clacu02g0248 | 162 | SMART | eIF1neu4 | 44 | 126 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Clacu02g0248 | 162 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 158 | IPR012340 | - | |
Clacu02g0248 | 162 | NCBIfam | translation initiation factor eIF-1A | 30 | 126 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Clacu02g0248 | 162 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 57 | 79 | IPR018104 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Clacu02g0248 | 162 | CDD | S1_IF1A | 49 | 125 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Clacu02g0248 | 162 | Gene3D | - | 18 | 162 | IPR012340 | - | |
Clacu02g0248 | 162 | PANTHER | EIF-1A | 18 | 162 | IPR001253 | GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro) | |
Clacu02g0248 | 162 | FunFam | Eukaryotic translation initiation factor 1A | 18 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0248 | Clacu-Chr2:2317281 | Clacu07g1577 | Clacu-Chr7:30424917 | 3.80E-46 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g0248 | K03236 | - | csv:101207840 | 264.233 |