Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0248 ATGATCTTTAGTTGTGGTCATCGAGATTACTCGTTTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG 489 41.92 MIFSCGHRDYSFIICDNAKEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGGDAYIEFEDEDIDKI 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2317281 2318229 + ClG42_02g0024800.10 Clacu02g0248 242316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0248 162 Hamap Translation initiation factor 1A [eif1a]. 32 126 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0248 162 Pfam Translation initiation factor 1A / IF-1 48 109 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0248 162 ProSiteProfiles S1 domain IF1 type profile. 38 112 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0248 162 SMART eIF1neu4 44 126 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0248 162 SUPERFAMILY Nucleic acid-binding proteins 20 158 IPR012340 -
Clacu02g0248 162 NCBIfam translation initiation factor eIF-1A 30 126 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0248 162 ProSitePatterns Eukaryotic initiation factor 1A signature. 57 79 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0248 162 CDD S1_IF1A 49 125 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0248 162 Gene3D - 18 162 IPR012340 -
Clacu02g0248 162 PANTHER EIF-1A 18 162 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Clacu02g0248 162 FunFam Eukaryotic translation initiation factor 1A 18 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0248 Clacu-Chr2:2317281 Clacu07g1577 Clacu-Chr7:30424917 3.80E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0248 K03236 - csv:101207840 264.233