Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0275 ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTCTTTGATTCGCCTGCTCGAATTCCGAATACGCACTTGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGAGCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAAGCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCGTCAGTTATGGCCAGTGATGATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTTATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCATGCTACTAAGGATTCTCTAAATAATTCGAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCGGGAGTTGCGAGTGGACAAAATAAGCAGCTCAAAGTAGCAATTGAAAGCTAA 1446 44.05 MLLAVINFAGNFIGRLSAGAPSLLPQLFDSPARIPNTHLFQYTTRRGVASRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNASKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITAEQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKAQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDDVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASYDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHDTVVHATKDSLNNSSSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVASGQNKQLKVAIES 481
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 2515361 2519233 + ClG42_02g0027500.10 Clacu02g0275 242343
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0275 481 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 240 402 IPR044810 GO:0003700(InterPro)
Clacu02g0275 481 SMART WRKY_cls 155 213 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 SMART WRKY_cls 328 387 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 MobiDBLite consensus disorder prediction 239 262 - -
Clacu02g0275 481 MobiDBLite consensus disorder prediction 233 294 - -
Clacu02g0275 481 MobiDBLite consensus disorder prediction 271 294 - -
Clacu02g0275 481 Gene3D WRKY domain 140 214 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 ProSiteProfiles WRKY domain profile. 323 388 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 FunFam WRKY transcription factor 144 215 - -
Clacu02g0275 481 FunFam WRKY transcription factor 57 314 388 - -
Clacu02g0275 481 MobiDBLite consensus disorder prediction 67 91 - -
Clacu02g0275 481 MobiDBLite consensus disorder prediction 50 66 - -
Clacu02g0275 481 Coils Coil 51 71 - -
Clacu02g0275 481 Gene3D WRKY domain 315 381 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 Pfam WRKY DNA -binding domain 156 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 MobiDBLite consensus disorder prediction 425 450 - -
Clacu02g0275 481 MobiDBLite consensus disorder prediction 48 91 - -
Clacu02g0275 481 MobiDBLite consensus disorder prediction 399 450 - -
Clacu02g0275 481 ProSiteProfiles WRKY domain profile. 150 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0275 481 SUPERFAMILY WRKY DNA-binding domain 150 213 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0275 Clacu-Chr2:2515361 Clacu10g0378 Clacu-Chr10:4791815 6.70E-59 dispersed
Clacu10g0439 Clacu-Chr10:5455623 Clacu02g0275 Clacu-Chr2:2515361 1.60E-67 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47182 PF03106 WRKY 1.30E-25 CL0274 Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0275 K18834 - csv:101212482 750.355