Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g0275 | ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTCTTTGATTCGCCTGCTCGAATTCCGAATACGCACTTGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGAGCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAAGCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCGTCAGTTATGGCCAGTGATGATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTTATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCATGCTACTAAGGATTCTCTAAATAATTCGAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCGGGAGTTGCGAGTGGACAAAATAAGCAGCTCAAAGTAGCAATTGAAAGCTAA | 1446 | 44.05 | MLLAVINFAGNFIGRLSAGAPSLLPQLFDSPARIPNTHLFQYTTRRGVASRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNASKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITAEQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKAQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDDVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASYDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHDTVVHATKDSLNNSSSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVASGQNKQLKVAIES | 481 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 2515361 | 2519233 | + | ClG42_02g0027500.10 | Clacu02g0275 | 242343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g0275 | 481 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 240 | 402 | IPR044810 | GO:0003700(InterPro) | |
| Clacu02g0275 | 481 | SMART | WRKY_cls | 155 | 213 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | SMART | WRKY_cls | 328 | 387 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | MobiDBLite | consensus disorder prediction | 239 | 262 | - | - | |
| Clacu02g0275 | 481 | MobiDBLite | consensus disorder prediction | 233 | 294 | - | - | |
| Clacu02g0275 | 481 | MobiDBLite | consensus disorder prediction | 271 | 294 | - | - | |
| Clacu02g0275 | 481 | Gene3D | WRKY domain | 140 | 214 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | ProSiteProfiles | WRKY domain profile. | 323 | 388 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | FunFam | WRKY transcription factor | 144 | 215 | - | - | |
| Clacu02g0275 | 481 | FunFam | WRKY transcription factor 57 | 314 | 388 | - | - | |
| Clacu02g0275 | 481 | MobiDBLite | consensus disorder prediction | 67 | 91 | - | - | |
| Clacu02g0275 | 481 | MobiDBLite | consensus disorder prediction | 50 | 66 | - | - | |
| Clacu02g0275 | 481 | Coils | Coil | 51 | 71 | - | - | |
| Clacu02g0275 | 481 | Gene3D | WRKY domain | 315 | 381 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | Pfam | WRKY DNA -binding domain | 329 | 386 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | Pfam | WRKY DNA -binding domain | 156 | 212 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | MobiDBLite | consensus disorder prediction | 425 | 450 | - | - | |
| Clacu02g0275 | 481 | MobiDBLite | consensus disorder prediction | 48 | 91 | - | - | |
| Clacu02g0275 | 481 | MobiDBLite | consensus disorder prediction | 399 | 450 | - | - | |
| Clacu02g0275 | 481 | ProSiteProfiles | WRKY domain profile. | 150 | 214 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | SUPERFAMILY | WRKY DNA-binding domain | 320 | 388 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu02g0275 | 481 | SUPERFAMILY | WRKY DNA-binding domain | 150 | 213 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0275 | Clacu-Chr2:2515361 | Clacu10g0378 | Clacu-Chr10:4791815 | 6.70E-59 | dispersed | |
| Clacu10g0439 | Clacu-Chr10:5455623 | Clacu02g0275 | Clacu-Chr2:2515361 | 1.60E-67 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47182 | PF03106 | WRKY | 1.30E-25 | CL0274 | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g0275 | K18834 | - | csv:101212482 | 750.355 |