Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0278 ATGATGCTCTTTCGGTTTTATAGACCCGTAAAGGATCTGGATGGAGAAAAGGCCAAACCACCAAAGGTTAGATTACTAGGTGGTTTCAAGGTGAAGAGGGCTAAGGAGCATTTCCATGGCCAAGGGTGGAGTAACCTACTTTATATCTTGCCATTTGGTGTAATTTTGATTCTGGGTGTTTGGTATATCTTTAGTCTTTGTGATGGGAGTTCAGTTCGGGAAGTGGAGATTCCAAATACGTGTAAAGAGAAGAGCTGGAACTTTCTGAAGCATTTCAATGTCAGTGAGAGTCAATTTCATGCTTTGGATTCGTTCTTCTTTCATTCAGATCAGACAGCATCTCTCCTCTGTGCTAAAGACTCAGAGCCTGGCAATGCACTGAAAGACTGCATTCCTTGTGCATTGAAGATTTTGGAACGGGAACAAGAATCGCAAAAGAAGCATGGGTGGCTTTCTGAAGATCTACAATCTGAAGGCCAGTGCCCAATTAGGGGTGAGATAGAGTCCTTCAATATTGGTCAATTGCAGTTAGTGGACAAGATACACTCACTTACTTCAAAATCTTCTTTTGCATTTGTGTCTCCCTGTCTTCAGATTCATAAAGAGAGGATCTTGCATACTAGGGAAATTGGAAATGGGCATTCTCGAAGTTTGAATGGATTAGTAATGGCATGCTTATGGATCCTTGCTGTAGTGATATCATGCCTGAAGATGTCTGGTTTTCATTTGAAATTAAAGAACCACATACACAAGCCAATAAAGCATCCATCGGTTGAGAATCAGCCAGTGATTCAGCTACAGCAGGTGTTGCTACAGCAGCAGTTAGATCCATCTCCAAGTCCTCCAAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTGCTTGGAATTATTGGATCCTTTTGGCTCTTTTGGTATTTGAACAACAAAATCATCTTGAGGAGAGAAGAAACACTTTCTAACATGTGCGATGAGCGAGCTCGAATGTTACAGGATCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCATCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACAGCTTTTGAACGACCACTAACCAGTGGGGTGGCTTATGCTTTGAAAGTTGATCATTCAGACAGAAAGCGATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACCCTGGTTCAGGATTCTATTCCTGAGAATTTAGACCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAAACTGTATCTCATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGCGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGCTGACATCTCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTGCTCACTTTTGCTGTCTATAACGCTGGGCTTCCTCTTGATGCAACACCAGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGGGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCTAGCAAACAATCAATTGTTGTTGATGTTTACGACACAACTAATGCATCTGCTCCCATTAAGATGTATGGATCTGATGTAATAGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGAAACCACAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTTTGGTTATTACTTTACTAGTTGGCCATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAAAATGACTATGATGAGATGATGAAACTCAAAAGTCGCGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACTGGACTGTGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTTGACCAAGCTAAAATTGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTCGATCCACGAGCTTTACTTGATAATGTGCTGTCAATGTTCTCTGGAAAATGTCATGAGAAGGGAATAGAGTTGGCTGTTTATGTCTCTAATTTGGTCCCTGAAGTTCTCATCGGTGACCCTGGACGCTTCCGGCAGATAATTACCAATCTTGTGGGAAATTCAATCAAGTTCACCAAGGACAAAGGACACATATTTGTTACTGTACACCTGGCAGACGAGGTGAGGACTCCCCTCGAGGCAATGGACAGTGTGCTAAGACAAGGCCTACATTTAGTGAATGAGACGCCGAGAAAAAGTCACAATACATTAAGTGGGTTTCCAGTGGTCGAGAGGTGCAAGAGTTGGGAGTTTTTCGAGATATTTAGAAGAACAGATGTGATGAAAGAAAACGACGACGTAATTAAGTTGCTTGTATCAGTTGAGGATACGGGTCATGGAATTCCTTTAGATGCACAAAGTCGAATTTTTATGCCTTTTATGCAAGCAGATAGTTCCACTTCACGCAAGTATGGTGGGACCGGAATAGGTCTGAGCATCAGCAAATGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGTAGCACATTTTCATTCACTGGATGTTTGAGAAAAGGCGATACGAGGTCTCTTGATACAAAGTTGCAGCAGAATGATTCAGCCATGTTAGATTTCCGAGGACTGCGAGCGTTGGTACTGGATGATAGAAGCATTCGAGCTGAGGTAACAAAATATCATCTGAAGAGGTTAGGGATCTCAGTGGACATAGTTTCGAGTCTGGCTTCAGCACATGAATACTTAACTAATAATTGCATCAAAAGTCCATCCAAGCGTTTGGCCATGCTGCTTATTGACAAAGATGTATGGGATAAGGAAACCGATCCGACAAGCCCTCGCGTGTTTAAAGAACATGGGGTAAATGGGAAGGAAGAATGGAGAGGAAGTCCTAAGATCTTTCTCTTAGCCACCTCCATTAGCCCTCAAGAGACTAGAGCTCTCAAGTCGGCTGGTTATGTTGATAATGTAATGACAAAACCCCTTAGGTCAGGTGTCCTGATTGGATGTTTCCAGGAAGCTTTCGGGAAGGTCAACCGAAAGAAACCGTCTATTTTGGGGAACTTACTGAGAGAAAAGCAGATATTGGTGGTTGATGACAATGCAGTCAATAGACGAGTTGCCGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTGGCGCTGCTATTTCATTGTTAAAACCACCACACAAGTTCAATGCTTGCTTCATGGATCTTCAAATGCCTGAGATGGATGGGTTTGAAGCAACACGGCAGATACGAAATAACGAAAATAAGGTTAACGAGGACATTGCTTCTGGGAAAGCATCAATTGAGATGTTTGGGAATGTGGCTCATTGGCATACACCCGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAATGAAGCATGCATGAATTGTGGGATGGATGGTTATGTAGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCAGTCGCTCGTTTCTTTGAGTCCGATGCTCGAGTAGAACATGAATAG 3753 42.61 MMLFRFYRPVKDLDGEKAKPPKVRLLGGFKVKRAKEHFHGQGWSNLLYILPFGVILILGVWYIFSLCDGSSVREVEIPNTCKEKSWNFLKHFNVSESQFHALDSFFFHSDQTASLLCAKDSEPGNALKDCIPCALKILEREQESQKKHGWLSEDLQSEGQCPIRGEIESFNIGQLQLVDKIHSLTSKSSFAFVSPCLQIHKERILHTREIGNGHSRSLNGLVMACLWILAVVISCLKMSGFHLKLKNHIHKPIKHPSVENQPVIQLQQVLLQQQLDPSPSPPKGAGKWRKKLLIIFVLLGIIGSFWLFWYLNNKIILRREETLSNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTAFERPLTSGVAYALKVDHSDRKRFEEEHGWTIKKMGTEDQTLVQDSIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNAGLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGSDVIDTGLLHISNLDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYDEMMKLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQLDCAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTKDKGHIFVTVHLADEVRTPLEAMDSVLRQGLHLVNETPRKSHNTLSGFPVVERCKSWEFFEIFRRTDVMKENDDVIKLLVSVEDTGHGIPLDAQSRIFMPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSQPGVGSTFSFTGCLRKGDTRSLDTKLQQNDSAMLDFRGLRALVLDDRSIRAEVTKYHLKRLGISVDIVSSLASAHEYLTNNCIKSPSKRLAMLLIDKDVWDKETDPTSPRVFKEHGVNGKEEWRGSPKIFLLATSISPQETRALKSAGYVDNVMTKPLRSGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGGAAISLLKPPHKFNACFMDLQMPEMDGFEATRQIRNNENKVNEDIASGKASIEMFGNVAHWHTPVLAMTADVIQATNEACMNCGMDGYVAKPFEEEKLYSAVARFFESDARVEHE 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2520926 2531679 - ClG42_02g0027800.10 Clacu02g0278 242346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0278 1250 CDD HisKA 645 706 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu02g0278 1250 Gene3D - 311 363 - -
Clacu02g0278 1250 ProSiteProfiles Response regulatory domain profile. 954 1085 IPR001789 GO:0000160(InterPro)
Clacu02g0278 1250 FunFam Histidine kinase 4 364 591 - -
Clacu02g0278 1250 SMART HKATPase_4 757 930 IPR003594 -
Clacu02g0278 1250 PRINTS Bacterial sensor protein C-terminal signature 914 927 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu02g0278 1250 PRINTS Bacterial sensor protein C-terminal signature 855 869 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu02g0278 1250 PRINTS Bacterial sensor protein C-terminal signature 890 908 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu02g0278 1250 PRINTS Bacterial sensor protein C-terminal signature 873 883 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu02g0278 1250 Pfam Response regulator receiver domain 1105 1189 IPR001789 GO:0000160(InterPro)
Clacu02g0278 1250 ProSiteProfiles Response regulatory domain profile. 1104 1241 IPR001789 GO:0000160(InterPro)
Clacu02g0278 1250 Gene3D - 1098 1247 - -
Clacu02g0278 1250 Gene3D - 617 708 - -
Clacu02g0278 1250 Pfam His Kinase A (phospho-acceptor) domain 645 710 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu02g0278 1250 SMART CHASE_2 360 559 IPR006189 -
Clacu02g0278 1250 SMART REC_2 1103 1237 IPR001789 GO:0000160(InterPro)
Clacu02g0278 1250 PANTHER TWO-COMPONENT HISTIDINE KINASE 284 1240 IPR050956 -
Clacu02g0278 1250 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 854 925 IPR003594 -
Clacu02g0278 1250 Gene3D - 709 930 IPR036890 -
Clacu02g0278 1250 SMART HisKA_10 645 710 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu02g0278 1250 ProSiteProfiles CHASE domain profile. 360 584 IPR006189 -
Clacu02g0278 1250 FunFam Histidine kinase 4 617 708 - -
Clacu02g0278 1250 ProSiteProfiles Histidine kinase domain profile. 652 930 IPR005467 -
Clacu02g0278 1250 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 699 925 IPR036890 -
Clacu02g0278 1250 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 631 711 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu02g0278 1250 CDD HATPase_EvgS-ArcB-TorS-like 762 928 - -
Clacu02g0278 1250 SUPERFAMILY CheY-like 949 1085 IPR011006 -
Clacu02g0278 1250 Coils Coil 622 642 - -
Clacu02g0278 1250 CDD REC_hyHK_CKI1_RcsC-like 1105 1237 - -
Clacu02g0278 1250 Pfam CHASE domain 363 557 IPR006189 -
Clacu02g0278 1250 SUPERFAMILY CheY-like 1101 1241 IPR011006 -
Clacu02g0278 1250 Gene3D CHASE domain 364 591 IPR042240 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0278 Clacu-Chr2:2520926 Clacu10g0060 Clacu-Chr10:968310 4.30E-41 dispersed
Clacu01g0671 Clacu-Chr1:7221363 Clacu02g0278 Clacu-Chr2:2520926 3.20E-276 transposed
Clacu02g1534 Clacu-Chr2:28791465 Clacu02g0278 Clacu-Chr2:2520926 1.60E-29 transposed
Clacu05g1754 Clacu-Chr5:26562297 Clacu02g0278 Clacu-Chr2:2520926 6.30E-43 transposed
Clacu06g0219 Clacu-Chr6:2518324 Clacu02g0278 Clacu-Chr2:2520926 3.40E-305 transposed
Clacu09g0553 Clacu-Chr9:4709125 Clacu02g0278 Clacu-Chr2:2520926 2.60E-27 transposed
Clacu11g0252 Clacu-Chr11:2280269 Clacu02g0278 Clacu-Chr2:2520926 2.60E-278 transposed
Clacu02g0278 Clacu-Chr2:2520926 Clacu02g0966 Clacu-Chr2:13310264 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47183 PF03924 CHASE 3.20E-35 CL0165 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0278 K14489 - vvi:100263145 1535.01