Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0307 ATGGCAATTGGCAAAGCACATGCCAAACCCCTTTTACCGATCTCTGTGTTGTGTGTTCTGGAAGCTAAGTCTATTTATTGTCGCCATGGTCCTCATGGGTCAGAATTGATTGTTCACGAAAGTTTTCTTCTCTTCCTCTTTATTCTCATGCCGAATAGCTTATGTGGATTTGTTGAGGGGGAAATCATGGGGTTTTGGCAATCTAGAAGGATTTCTAAGGGAAAGTGTCAAAGATCTGATTGCAGCATGGGTTACATTTGTGATTTCTGTGGGCAACAAAGGTCGATTGTGTACTGCCGCTCCGATGCTGCAGCTTTGTGCTTGTCTTGTGACCGAAATGTTCACTCTGCCAATGCCTTGTCAAGGCGTCACTCGAGAACATTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACAGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCACTTCTGGAAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCACATTATGGACCAACCCATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGTTGAAGAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCGGCTGCTGCAGAGGGGGCGTCAGGCGGTTTTGTTAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTTCGAAGACTGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCAGACTGTGGAGCTTCATCAATGCTCCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTATTGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTCGAAGACGTGTCAAGGGACGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCTTTGAGTCAAACCAGAAGCTACTGA 1470 43.81 MAIGKAHAKPLLPISVLCVLEAKSIYCRHGPHGSELIVHESFLLFLFILMPNSLCGFVEGEIMGFWQSRRISKGKCQRSDCSMGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRLKSLSAAKSGCPGAAAAEGASGGFVNNVMQPASSNAASADSVMSSKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2786928 2791940 - ClG42_02g0030700.10 Clacu02g0307 242375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0307 489 CDD Bbox1_BBX-like 86 129 IPR049808 -
Clacu02g0307 489 SMART bboxneu5 82 129 IPR000315 GO:0008270(InterPro)
Clacu02g0307 489 ProSiteProfiles CCT domain profile. 432 474 IPR010402 GO:0005515(InterPro)
Clacu02g0307 489 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 83 479 - -
Clacu02g0307 489 Pfam CCT motif 432 474 IPR010402 GO:0005515(InterPro)
Clacu02g0307 489 ProSiteProfiles Zinc finger B-box type profile. 125 172 IPR000315 GO:0008270(InterPro)
Clacu02g0307 489 ProSiteProfiles Zinc finger B-box type profile. 82 129 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0307 Clacu-Chr2:2786928 Clacu02g1124 Clacu-Chr2:21615967 2.30E-123 dispersed
Clacu11g1367 Clacu-Chr11:23867643 Clacu02g0307 Clacu-Chr2:2786928 2.40E-06 dispersed
Clacu02g0307 Clacu-Chr2:2786928 Clacu11g1418 Clacu-Chr11:25084100 1.60E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47186 PF06203 CCT 8.00E-16 CL0281 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0307 - - - 0.0