Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0311 ATGGGAGCTCATTCCCATGGCGGTCGAAAACCGGCCAATATCATCACCGATTCTCACCACGAATTCCTCCGACCGTTTCTCGAAAGTGAAGAGGAGTTTACCGGAGATGCCATCTTTTACTCGTATACAAGACACATCAATGGCTTTGCAGCAATGTTGGAAGATGAAGTTGCTGCTCAATTAGCTAAGCACCCGAAAGTGGTGTCGATTTTTTTGAATAGAGGAAGAAAGTTACATACAACAAGATCATGGGAGTTCATGGGAATAGAGAACAACAATGGACTTATCACTTCAGAATCAATATGGAAGAAGGCAAGATTTGGAGAAGACACCATTATTGGAAACCTTGATACTGGGGTGTGGCCAGAATCAAAGAGCTTTAGTGATTATGATGATTTGGGACCAATTCCTCTTAAGTGGAGAGGAATCTGCCAAAACCAAAATGATCCTTCTTTCCATTGCAATAGGAAACTAATCGGAGCAAGATACTTCAACAAAGGCTATGAATCCGTCGTCGGACCTCTCAATTCTTCGTTCAATTCGCCGAGGGACAAAGAAGGGCATGGTTCTCATACCTTGTCCACGGCGGGCGGTAACTTCGTCGCCGGAGCTAGCGTTTTCGGCTTGGGGAATGGCACCGCCAAGGGCGGATCACCTAGGGCTCGCGTGGCCGCTTACAAGGTCTGCTGGCCTCCAGCGGCCGGAAATGAGTGCTTCGATGCCGATATATTGGCGGCGTTTGATTTGGCGATCCACGACGGCGTCGACGTGTTGTCGGTGTCGCTTGGAGGAGATCCAAATCCGTTGTTTAACGATAGTGTAGCCATTGGCTCATTCCACGCCGTGAAGCATGGGATTGTTGTGATTTGCTCTGCCGGAAATTCGGGACCGGCAGCCGGTTCGGTAACCAATATTGCGCCCTGGCAAATCACCGTCGGAGCCAGCACCATGGACAGGAAGTTCCCTAGTCTTGTCGTTCTTGGGAACAAGAAGCAGATTGAGGGTGAAAGCCTGTCTCAAGAAGCTTTGCCAAGCAGGAAGTTATATCCACTCATGAGTGCCGCGGATGTTAGATTAGCCAATGCATCAGCTCATGAAGCTCAATTGTGTAAAGCTGGTACGCTTGATCCTATGAAGGCTAAGGGAAAGATTCTCGTCTGCCTTCGAGGCGATAATGCAAGAGTTGACAAGGGCGAGCAAGCACTATTGGCTGGTGCCATGGGCATGATTCTCGCCAATAATGAGCCTAGTGGGAATGAAATCCTTGCTGACCCACACGTCCTTCCAGCCTCGCACATAAACTTCACTGATGGCACTTCGGTCTTTGCATACATCAATTCAACCAAGTTTCCTGAGGCTTATATCACACGAGCTACAACTCAATTAGGTATAAGGCCAGCTCCATTTATGGCAGCATTTTCATCAGTGGGGCCAAACACTATTACTCCAGAGATCCTAAAGCCTGATATTACAGCTCCTGGGCTGAGTGTTATAGCTGCTTATACTGAAGCAGAAGGCCCTACAAATCAAGAATATGATAATCGTCGGGTTCCTTTTAACTCAGTATCAGGAACTTCTATGTCATGCCCTCATGTTTCTGGTATTGCTGGTCTTCTCAGGACTCTTTACCCTCATTGGAGTCCTGCAGCTATAAAATCTGCCATCATGACCACAGCAAACACTTTGGACAACAACTTCGAGCCGCTCCTCAATGCGTCCTACTCTGTGGCCACACCATTCAACTATGGAGCAGGACACATTAATCCAAATGGTGCTACGGATCCTGGCTTGGTCTATGACATAGAGGTTAATGAGTATCTGTTATTTCTATGTGCATTAGGATATAACCAAGCTCAAATATCACAATTCTCCAATGGTCCTTTCAATTGCTCGGAGCCTATTAGTCTTACAAATCTCAACTACCCTTCAATTACTGTCCCTAAGCTCTCTAGATCGATCACAATTACTCGAAGACTTAAGAACGTTGGTTCTCCCGGAACGTACAAAGCTGAGATAAGAAAACCGGCTGGGATATCGGTTTGGGTTAAGCCAAAGACATTGGACTTCACAAGATTAGGTGAAGAGCAGAGCTTCAAAGTTTTTATGAAAGTTAAGGAACAGAATGTAGGACGGAAGAACTATGTATACGGTGATTTGATATGGTCAGATGGTAAGCACCATGTAAGAAGCCCTATTGTGGTAAAGGTAGTTTAG 2214 46.3 MGAHSHGGRKPANIITDSHHEFLRPFLESEEEFTGDAIFYSYTRHINGFAAMLEDEVAAQLAKHPKVVSIFLNRGRKLHTTRSWEFMGIENNNGLITSESIWKKARFGEDTIIGNLDTGVWPESKSFSDYDDLGPIPLKWRGICQNQNDPSFHCNRKLIGARYFNKGYESVVGPLNSSFNSPRDKEGHGSHTLSTAGGNFVAGASVFGLGNGTAKGGSPRARVAAYKVCWPPAAGNECFDADILAAFDLAIHDGVDVLSVSLGGDPNPLFNDSVAIGSFHAVKHGIVVICSAGNSGPAAGSVTNIAPWQITVGASTMDRKFPSLVVLGNKKQIEGESLSQEALPSRKLYPLMSAADVRLANASAHEAQLCKAGTLDPMKAKGKILVCLRGDNARVDKGEQALLAGAMGMILANNEPSGNEILADPHVLPASHINFTDGTSVFAYINSTKFPEAYITRATTQLGIRPAPFMAAFSSVGPNTITPEILKPDITAPGLSVIAAYTEAEGPTNQEYDNRRVPFNSVSGTSMSCPHVSGIAGLLRTLYPHWSPAAIKSAIMTTANTLDNNFEPLLNASYSVATPFNYGAGHINPNGATDPGLVYDIEVNEYLLFLCALGYNQAQISQFSNGPFNCSEPISLTNLNYPSITVPKLSRSITITRRLKNVGSPGTYKAEIRKPAGISVWVKPKTLDFTRLGEEQSFKVFMKVKEQNVGRKNYVYGDLIWSDGKHHVRSPIVVKVV 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2823402 2833043 + ClG42_02g0031100.10 Clacu02g0311 242379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0311 737 Pfam PA domain 366 439 IPR003137 -
Clacu02g0311 737 FunFam p69E protein-like 610 737 - -
Clacu02g0311 737 Pfam Peptidase inhibitor I9 12 79 IPR010259 -
Clacu02g0311 737 Gene3D - 610 737 - -
Clacu02g0311 737 FunFam Subtilisin-like protease SBT1.5 110 330 - -
Clacu02g0311 737 CDD PA_subtilisin_like 325 455 - -
Clacu02g0311 737 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 35 733 IPR045051 -
Clacu02g0311 737 Pfam Fibronectin type-III domain 638 734 IPR041469 -
Clacu02g0311 737 CDD Peptidases_S8_3 77 560 IPR034197 -
Clacu02g0311 737 SUPERFAMILY PA domain 377 461 IPR046450 -
Clacu02g0311 737 Gene3D Peptidase S8/S53 domain 110 606 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu02g0311 737 ProSiteProfiles Serine proteases, subtilase domain profile. 83 593 - -
Clacu02g0311 737 FunFam subtilisin-like protease SBT1.5 318 462 - -
Clacu02g0311 737 Gene3D - 318 462 - -
Clacu02g0311 737 PRINTS Subtilisin serine protease family (S8) signature 108 127 IPR015500 -
Clacu02g0311 737 PRINTS Subtilisin serine protease family (S8) signature 184 197 IPR015500 -
Clacu02g0311 737 PRINTS Subtilisin serine protease family (S8) signature 523 539 IPR015500 -
Clacu02g0311 737 ProSitePatterns Serine proteases, subtilase family, serine active site. 524 534 IPR023828 -
Clacu02g0311 737 Pfam Subtilase family 108 562 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu02g0311 737 SUPERFAMILY Subtilisin-like 78 597 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu02g0311 737 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 79 IPR037045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1179 Clacu-Chr1:17875065 Clacu02g0311 Clacu-Chr2:2823402 5.60E-31 dispersed
Clacu01g1183 Clacu-Chr1:17926655 Clacu02g0311 Clacu-Chr2:2823402 1.10E-244 dispersed
Clacu02g0311 Clacu-Chr2:2823402 Clacu10g0390 Clacu-Chr10:4921865 3.30E-267 dispersed
Clacu02g0311 Clacu-Chr2:2823402 Clacu08g1797 Clacu-Chr8:27298284 6.50E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0311 - - - 0.0