Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0316 ATGGTATTCCAAACTTTCAACTGCGATCATCAACGGCAAGAGATAAGCAATGAACGCAGATTAGAAAACGTGATGATCCGAATGAAAGAAGGAGTGGGTTTCGTGAGTGTGGAACGAAGAGGTTGGATTCTGTTCTCCCTCGGTGACGATCATTGGGTTTCTCAAACGAAGTCTAGGGTTCCAGCGGATTCATCAGTGGAGAGGATTTATGATCAGAAAACCGATAGGCCATCTGAATCTTCATGGGGTCTGGAATTTCCCATTGCCATATCACAAATCTATGGCTCTGTTTCACTTTCATGCGCTCTGAAACTTCTTCTTCTGCTTCCAACTTTGATATTTCGAGTGTGTATTGCTGGTGTATCGGGCAAAATGATCAAAAATAAAAAAAGTTCACTGTTGCGCAAAATATTCCCATTGGAACTTCTTCCTTGCAGTACATTTTGTACACATGCAAGAGAAAAAGATCAGAAAATGGATGAGAAGAGAGAAACCAAAGAGCCATCAAGCTCTAATCTCTCATCTTCTGCTCATCAAATCAGGCCTACAGAGAAGAGGACACCAGTTGAAGTCTTTCAAGTGCCTGCAAGGTCTGGAGATGGCCATTCCAAGGGGGAGAGTGATGCGACTCATGAGCAGGATGAGGCAAAATCATCCCTCTCTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAGAAAGTGGATGGCATTTGAAAATGAAAACTTTAATATAACAGAAACGTACACAAAGAACTTCAGTGGTAGCTTTGGGTCATATTCTACTGATCTCTTGGAAACAAACATAACAAAAAGGCCGGCAGAGGAGAACAAGATTGATCATTTATCATCACTGCAACTGACATATGTGATCTCAGATGCAACAAAACCAGATTGCCCCATCATGTTTGCCAGCAATAGGTTCTTGGTTATGACTGGCTATACACTGGAGGAGGTCATCGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAAACAGATAAGAATGAAGTCGCCAAAATACGAGATGCAATTAGAAAGGGGAATAGTTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGATTCCCATGGCAACATCATCAAATTTATTGGAATGCAGGTTGAGATCGCCAAAAACACAGAAGAAAAAGAGAGAACCATGAAGTCCATGTCCATTACAGAGTTCCAAGCTGTGAAAAGTCTAAGATGTCACATTCAGTCAAAAAGGCATGATGCTGATACAAAGCACGAAGACCAAGAAATGACTGATGCTGATTATGCTCTGTACAAGGCTCTGGATATTGATGAGAATATTAGCACATCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACTCTAGGTTCTGCAGTAGAACGTGAAGAAAAGACAGTTGTTGAGGCATCTGTTTTCAATCCCAGGGATGGTGATTGTGTTGCTAAAAGAGAAAGGGACATATGTCAAGGAATTGAGTTGGCTACCACATTGGAACGGATTGAGAAGATATTTTTTATCACTAACCCAAGGCTTCCTGATAATCCTATTATATTCGCATCTCATAGGTTTCTTGATTCTACAGAATACTCATGTGAAGAAATTCTGGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATCAAGCAACTGTCTCAAAGATAAACAATGCAATTGAAGAGCAGAGAGAAATCACTCTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTCTCGAATGTATTCCACTTGCAACCCATGTGGGATCAAAAGAAGGGGGAGCTTCAATATTTCATTGCGGCACAACTTCATCTAAAACCTTCAAGAGGCTGGCTTTTAGATCAAACGGAGCATGAAATTGCTAAGCTGGCCAAAGCTGTAGCTGAGAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTCTGGGCAATCTACTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACATTCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATTGGACTCCATCATTTTAAGCCAATAAGACCTCTGGGTTTTGGAGACATTGGCAGTGTTCATCTCGTACAACTAAACGGAACAGGTGAACTCTTTGCTATGAAGGCTATAGAAAAGTCAGTAATATTAAATCGAAACAAGGTTCATCGAGCATGCATGGAAAGGGAAATCATATCACTTCTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACGCCTACGCACATTTTTCTTATTATGGACTTCTGCCCCGGTGGAGAGTTATTTACATTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTATCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCTGAAAATATTCTACTCCAGAAAGATGGACATATCATCCTCACTGATTTTGATTTATCGTTTAAGACGTCTAGCATACAAACCATAGAATCTTCAACCCCAAGAAAGAAGACATGTAGGCATAAATCACTGCCGATGGTCGTCGTTGAACCTATGGCAGAACTGAATTCATTCATTGGAACTGAAGAGTACATTGCCCCAGAGATCATAATGGGTGCAGGCCATGGTAGTTCTATTGACTGGTGGACTCTAGGTATCTTATTGTATGAAATGCTCTATGGTCGCACTCCCTTCAAAGGCAAAAACAGGAATAAAACTTTTGCCAATATTTTGTTCAAGGACTTGACCTTCCCCATTAGTATTCAGGCAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAGAGAGACCCTGCACGTCGTCTAGGATCGAGGACCGGTGCTGATGAAATCAAACGACATCCATTTTTCCGTCAAATAAATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAATTGAGAGAGATCCAAAAGCTAATGATTTGAAGTGGGAAGATGGAATGCTCAGTCTTTCAGAGTCGCGCGCGGGTGAGGATGTTAGTGGTGTCGGTGGTGGGTTGAAGGTAGAGGAGTCGCCACTGGTGGGGAAGCCGGAAGTGGAGTCGGTCAATTTTTTGCCGGAGTCTCGAATTTGA 3198 42.06 MVFQTFNCDHQRQEISNERRLENVMIRMKEGVGFVSVERRGWILFSLGDDHWVSQTKSRVPADSSVERIYDQKTDRPSESSWGLEFPIAISQIYGSVSLSCALKLLLLLPTLIFRVCIAGVSGKMIKNKKSSLLRKIFPLELLPCSTFCTHAREKDQKMDEKRETKEPSSSNLSSSAHQIRPTEKRTPVEVFQVPARSGDGHSKGESDATHEQDEAKSSLSSFRPAASMEASRKWMAFENENFNITETYTKNFSGSFGSYSTDLLETNITKRPAEENKIDHLSSLQLTYVISDATKPDCPIMFASNRFLVMTGYTLEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKFIGMQVEIAKNTEEKERTMKSMSITEFQAVKSLRCHIQSKRHDADTKHEDQEMTDADYALYKALDIDENISTSDNQKARFKERTLGSAVEREEKTVVEASVFNPRDGDCVAKRERDICQGIELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYSCEEILGRNFWFLQGPETDQATVSKINNAIEEQREITLQIINYTKSGKKFSNVFHLQPMWDQKKGELQYFIAAQLHLKPSRGWLLDQTEHEIAKLAKAVAENVDKAVRELPDANLKPKNFWAIYCQPVLPRPHKKYIPSWIAIQKITSHGEKIGLHHFKPIRPLGFGDIGSVHLVQLNGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTPTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILTDFDLSFKTSSIQTIESSTPRKKTCRHKSLPMVVVEPMAELNSFIGTEEYIAPEIIMGAGHGSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILFKDLTFPISIQASLAAKQLIDALLQRDPARRLGSRTGADEIKRHPFFRQINWPKIRTMTPPSPEVALQIIERDPKANDLKWEDGMLSLSESRAGEDVSGVGGGLKVEESPLVGKPEVESVNFLPESRI 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2871310 2886477 + ClG42_02g0031600.10 Clacu02g0316 242384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0316 1065 ProSiteProfiles PAC domain profile. 348 402 IPR000700 -
Clacu02g0316 1065 MobiDBLite consensus disorder prediction 201 218 - -
Clacu02g0316 1065 Gene3D Transferase(Phosphotransferase) domain 1 783 998 - -
Clacu02g0316 1065 Pfam Protein kinase domain 702 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0316 1065 Gene3D PAS domain 490 651 - -
Clacu02g0316 1065 Pfam PAS domain 523 613 IPR000014 -
Clacu02g0316 1065 Pfam PAS domain 295 390 IPR000014 -
Clacu02g0316 1065 MobiDBLite consensus disorder prediction 154 168 - -
Clacu02g0316 1065 ProSiteProfiles Protein kinase domain profile. 699 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0316 1065 SMART pas_2 503 572 IPR000014 -
Clacu02g0316 1065 SMART pas_2 276 345 IPR000014 -
Clacu02g0316 1065 ProSiteProfiles PAS repeat profile. 274 347 IPR000014 -
Clacu02g0316 1065 Gene3D Phosphorylase Kinase; domain 1 698 782 - -
Clacu02g0316 1065 CDD PAS 301 390 IPR000014 -
Clacu02g0316 1065 FunFam Putative LOV domain-containing protein 783 996 - -
Clacu02g0316 1065 MobiDBLite consensus disorder prediction 154 224 - -
Clacu02g0316 1065 SUPERFAMILY PYP-like sensor domain (PAS domain) 295 388 IPR035965 -
Clacu02g0316 1065 SMART serkin_6 699 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0316 1065 SMART pac_2 351 393 IPR001610 -
Clacu02g0316 1065 SMART pac_2 578 621 IPR001610 -
Clacu02g0316 1065 PANTHER FLIPPASE KINASE 1-RELATED 652 1000 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu02g0316 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0316 1065 CDD STKc_phototropin_like 697 998 - -
Clacu02g0316 1065 SUPERFAMILY PYP-like sensor domain (PAS domain) 516 612 IPR035965 -
Clacu02g0316 1065 NCBIfam PAS domain S-box protein 527 612 IPR000014 -
Clacu02g0316 1065 NCBIfam PAS domain S-box protein 301 398 IPR000014 -
Clacu02g0316 1065 Gene3D PAS domain 289 447 - -
Clacu02g0316 1065 SUPERFAMILY Protein kinase-like (PK-like) 676 1011 IPR011009 -
Clacu02g0316 1065 CDD PAS 515 610 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0316 Clacu-Chr2:2871310 Clacu02g2127 Clacu-Chr2:34417912 1.80E-229 dispersed
Clacu11g1396 Clacu-Chr11:24594040 Clacu02g0316 Clacu-Chr2:2871310 6.20E-17 dispersed
Clacu03g0933 Clacu-Chr3:12131898 Clacu02g0316 Clacu-Chr2:2871310 1.60E-10 transposed
Clacu05g0665 Clacu-Chr5:5573719 Clacu02g0316 Clacu-Chr2:2871310 4.50E-34 transposed
Clacu06g1767 Clacu-Chr6:28215011 Clacu02g0316 Clacu-Chr2:2871310 1.10E-56 transposed
Clacu01g2192 Clacu-Chr1:33290963 Clacu02g0316 Clacu-Chr2:2871310 2.10E-89 wgd
Clacu02g0316 Clacu-Chr2:2871310 Clacu02g1101 Clacu-Chr2:20704663 2.90E-272 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73314 PF00069 Pkinase 1.20E-62 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0316 K20715 - csv:101213364 1527.69