Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0323 ATGTCCGATTTGAACTCCGCCGTCCACGGCGGCTCCTCTCGTTACGCCGATCAATTTTTCGGTTCAGAGCTCCAACTTCAAAATTTCTCACAAACCCATCTCGCCGATCCCAACAACTCGCCGGAAAGTCACCAGAAAAATCTCAATCCGGCCGATTCTACCACCCCCACTAGCGGCGGTTCGTCCACGCGCCGTTCTCGTGGCCGCCCCGCCGGCTCCAAGAACAAGCCAAAACCGCCGGTGATTGTAACACGTGACAGCCCCAATGCTCTGAGATCGCACGTGCTGGAGGTCTCCGCCGGCTCCGATGTGGTCGAATCCGTCTCGAGTTACGCCACGCGCCGCCGCCACGGCGTTTGCATTCTCGCCGGCACCGGCGCCGTCACAAACGTCAACTTGCGCCAGCCGGCGGCGCCGTCGGGAACTGTTATGACGCTTCATGGAACGTTTGAGATTGTGTCTCTGACTGGTACGGCGTTGCCACCGCCGGCGCCTCCGGGTGCCGGAGGGATAACTGTTTATTTGTCCGGCGGGCAAGGGCAGGTCGTCGGAGGAAGTGTTGTCGGGCCGTTGACGGCGTCAAGTCCCGTTGTATTGATGGTGGCATCGTTTACTAATGCGGTGTATGATCGGCTGCCGCTGGACGAGGCGGAGCCGCCGGTGCAAGCTCAGCCATCGGCATCACCATCTTCAGATATTACAGGTGGAGGCGGGCAGCTTGGGGGCATCGGAAGCTTCAACCTGCCCGACGACAATTACGGTTGGAATGGCAATACATCGAGGCCTCCGACGACGCTGTGA 801 59.93 MSDLNSAVHGGSSRYADQFFGSELQLQNFSQTHLADPNNSPESHQKNLNPADSTTPTSGGSSTRRSRGRPAGSKNKPKPPVIVTRDSPNALRSHVLEVSAGSDVVESVSSYATRRRHGVCILAGTGAVTNVNLRQPAAPSGTVMTLHGTFEIVSLTGTALPPPAPPGAGGITVYLSGGQGQVVGGSVVGPLTASSPVVLMVASFTNAVYDRLPLDEAEPPVQAQPSASPSSDITGGGGQLGGIGSFNLPDDNYGWNGNTSRPPTTL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2942137 2944405 - ClG42_02g0032300.10 Clacu02g0323 242391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0323 266 CDD DUF296 92 158 IPR005175 -
Clacu02g0323 266 MobiDBLite consensus disorder prediction 28 89 - -
Clacu02g0323 266 MobiDBLite consensus disorder prediction 28 68 - -
Clacu02g0323 266 FunFam AT-hook motif nuclear-localized protein 91 220 - -
Clacu02g0323 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 235 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Clacu02g0323 266 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 220 - -
Clacu02g0323 266 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 206 IPR005175 -
Clacu02g0323 266 MobiDBLite consensus disorder prediction 217 266 - -
Clacu02g0323 266 ProSiteProfiles PPC domain profile profile. 88 226 IPR005175 -
Clacu02g0323 266 MobiDBLite consensus disorder prediction 251 266 - -
Clacu02g0323 266 Gene3D - 91 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0323 Clacu-Chr2:2942137 Clacu02g1735 Clacu-Chr2:30844980 1.40E-58 dispersed
Clacu02g0323 Clacu-Chr2:2942137 Clacu06g0033 Clacu-Chr6:547548 8.30E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0323 - - - 0.0