Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0329 ATGGCTGCCTTTGTAGCTATAATAGTCTTCTATTTGGTTCTTCTGCAAACACCCACCAACATATTTGCGGTTAAGGATGAAGAAGAGTGGAAATCTGCTACTGCAACGTACTCCAAAGAAACAGATGGGTCAATTGTTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGATAAGCTATGGAAAATATAGCGCTGGACTGAGTAGCATGTTGTTCAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACTGTCATTCTAACAGCCACCGACTTCTGTCCTCCAAATTACGGCTTCTCTTCCGATTATGGTGGTTGGTGTAATTTTCCCAAGGAACACTTTGAGATGTCAGAGGCAACGTTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGAATGAGATTCACAGTTAGTGGGAATTCTCGTTTCTTTCAAGTGCTGATTACAAATGTTGGAATGGATGGTGAATTAGTGGCAGTCAAAGTAAAAGGATCAAGAACAGGATGGATACCACTGGCAAGAAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGACAACCTCTCTCTTTTGAAGTTACCTCCAGCAGTGGAAGAGCACTTACTTCCTACAGTGTTGCACCTGGAAACTGGCAGTTTGGGCAGACATTTGAAGGGAAACAATTTTGA 765 43.27 MAAFVAIIVFYLVLLQTPTNIFAVKDEEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGFSSDYGGWCNFPKEHFEMSEATFAEIAEKKADIVPVQYRRVRCDRSGGMRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYSVAPGNWQFGQTFEGKQF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3013966 3015508 - ClG42_02g0032900.10 Clacu02g0329 242397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0329 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 162 IPR007112 -
Clacu02g0329 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576(InterPro)
Clacu02g0329 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Clacu02g0329 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576(InterPro)
Clacu02g0329 254 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Clacu02g0329 254 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Clacu02g0329 254 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Clacu02g0329 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Clacu02g0329 254 Gene3D - 161 252 IPR036749 -
Clacu02g0329 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Clacu02g0329 254 SMART dpbb_1 65 152 IPR007112 -
Clacu02g0329 254 Pfam Lytic transglycolase 66 152 IPR009009 -
Clacu02g0329 254 FunFam Expansin 162 254 - -
Clacu02g0329 254 CDD DPBB_EXPA_N 29 157 - -
Clacu02g0329 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Clacu02g0329 254 Gene3D - 16 158 IPR036908 -
Clacu02g0329 254 PANTHER EXPANSIN-A15 5 254 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 SUPERFAMILY Barwin-like endoglucanases 29 180 IPR036908 -
Clacu02g0329 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Clacu02g0329 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0329 Clacu-Chr2:3013966 Clacu07g0524 Clacu-Chr7:6700707 5.70E-73 dispersed
Clacu02g0329 Clacu-Chr2:3013966 Clacu02g2063 Clacu-Chr2:33926913 6.70E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0329 - - - 0.0