Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0340 ATGAGTATGGTTTGGCTTCTTTTAGTACTTGTTTGTATTCAAGGAATTTCAGAAGGGGCCTCAAGAAATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTCAATGGGAAAGTTTCCAAGATTGCCATTGAAGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGAGGAAGAAAGCTATCTATTTCCATATATGATGCAAATTATAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCCATCCTTGGTCCACAAGATTCTACAATGGCTCATACACTCTCACATCTTTCTAATGAACTCCATATCCCGTTACTCTCATTTACAGCATTGGACCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAATTTCAAATGACTGCAATTGCTGATATGATTCATTATTACGGTTGGCATGACGTCGTTGTGGTTTTCACCGACGACGATCAATGTCGAAACAGTATGATTGAATTAGGTGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTGCCACTCCCCCCTTACCCAACAGCAACAAGAACTCAAGTTCAAGATGCATTGGTAAAGATCAAAATGATGGAATCTCGAGTAATCGTATTGTACACGTTTTCGAAAACCGGTTTCTTGGTTTTCGAAGTGGCTCAAAGCCTTAGAATGATGGGAGCTGGTTATGTTTGGATAACCTCTAGTTGGCTATCAACAGTAATAGATTCTACTTCACCACTTCCTTTGAAAATTGCCAACTCCATCCAAGGAGTTCTTACACTTCGTCTACACACGCCCGATTCGAAAATGAAACGATCTTTTATATCGAGATGGAACAAGCTGAGTAATGGCTCCTCAATTGGGTTGAATACGTATGGCCTATATGCTTATGATACTGTTTGGATGGTTGCAAGAGGAGTGAAAAAGTTATTGGATCAAAATGGAACTATCTCATTCTCCAAAGTTACAAATGCTGGTAATCTTAGTGGAGAGACTTTGGATTTTAGTTCATTGGGAATCTTTAATGAAGGAAATGATTTGCTTAACTATTTATTGAATATCAGTATGACTGGTTTAACAGGGCCTATTAAGTTTCTAGATAAATCCCCTTTACATCCTTCATATGATATCTTAAATGTAGTGAAATCTGGTATGAAGAGAATCGGATATTGGTCTAACTATTCCGGTTTGTCTGTCGTGGCGCCCGAAACGTTGTATGGCAAAGCAATTAATCGTTCTATGTTAACCGAACAGTTAAGCAGCACAATGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTACCGCTCGATGGAAGGCGGCTAAGAATCGGCGTTCCACGCAGAGTTAGTTATCAGGAATTCGTGACACCGGGAAATGGAAATGGTACAATCAAAGGATACTGCATTGATGTGTTCACTGCTGCTGTCAACTTGCTTCCATATGCAGTTACTTATGAGTTCATTTTGTTTGGAGATGGTGAGAAGAATCCTAGCTACCTTGAGCTTGTAAATAAAGTTGCTTTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCTATTGTGACTAGTCGGACAAGGATCGTCGATTTTACGCAGCCTTATATCGACTCGGGGCTAGTAGTTCTGGCCCCTGCAAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGCTGTCACAGCAGCATTTTTCTTCCTCATTGGATTAGTTGTGTGGATGTTGGAACATCGGAAAAACGACGAATTTCGAGGGCATCCTAGGACACAAATTGTCACAATCCTCTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAAAACGTCGTGAGCACGCTCGGTCGTTTCGTGATAGTCGTGTGGCTTTTTGTGGTTCTAATTATCAACTCGAGCTACACCGCTAACCTGACATCGATATTCACAGTACAACTAGCCACCTCATCTATCACAGGAATCGATTCATTGATATCTAGCAATGTGCATATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGTGAGCAACTTAATGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCCGCTCTCAAGAACGGAACGGTCGGTGCTATTGTCGACGAGCAACCATACATCGACCTCTTTCTCACCGAGTATTGCGATTATTTGATAAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCTCCATTGGCGGTAGACTTATCGACCGCCATACTCACACTCTCAGAGAACGGCCATCTTCAGAAGATTCACGACAAGTGGTTCTCAAGAAAATCTTGCAGTTCAGGAGATTCCGATCTAAATTCAGAGCAACTTCACTTGCAGAGCTTCATCGGATTGTTCTCCATTTGTGCCGGCGTGTGTTTGTTCGCTCTTTTGCTTCATTTTTTCTTGACCATGTGTCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCGACCACCGGTACCGGTGGCGATGGCGGTGGCGGTGCCTGCCCTACGGCGCTGCGAAATTTCTTTTCGTTTGCAGATAAGAAGAAGGAAAGAAAGACGAGCTATTCGAAGAGGAAGGTCGAAGATACATTCTCGAGTGAACGTGGAGAGGATTAG 2724 42.14 MSMVWLLLVLVCIQGISEGASRNEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIYDANYSGFLGITGAMKYMVSDTVAILGPQDSTMAHTLSHLSNELHIPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADMIHYYGWHDVVVVFTDDDQCRNSMIELGDKLEERSLKISSKVPLPPYPTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMGAGYVWITSSWLSTVIDSTSPLPLKIANSIQGVLTLRLHTPDSKMKRSFISRWNKLSNGSSIGLNTYGLYAYDTVWMVARGVKKLLDQNGTISFSKVTNAGNLSGETLDFSSLGIFNEGNDLLNYLLNISMTGLTGPIKFLDKSPLHPSYDILNVVKSGMKRIGYWSNYSGLSVVAPETLYGKAINRSMLTEQLSSTMWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGNGNGTIKGYCIDVFTAAVNLLPYAVTYEFILFGDGEKNPSYLELVNKVALKEFDAAVGDIAIVTSRTRIVDFTQPYIDSGLVVLAPAKKLNSSPLAFLRPFTPMMWAVTAAFFFLIGLVVWMLEHRKNDEFRGHPRTQIVTILWFGFSTMFFAQRENVVSTLGRFVIVVWLFVVLIINSSYTANLTSIFTVQLATSSITGIDSLISSNVHIGFQVGSFAESYLSEQLNVQKSRLIALGSPEEYAAALKNGTVGAIVDEQPYIDLFLTEYCDYLIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKIHDKWFSRKSCSSGDSDLNSEQLHLQSFIGLFSICAGVCLFALLLHFFLTMCQFNRHLKQDPEASTTGTGGDGGGGACPTALRNFFSFADKKKERKTSYSKRKVEDTFSSERGED 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3105105 3110751 - ClG42_02g0034000.10 Clacu02g0340 242408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0340 907 Gene3D - 573 714 - -
Clacu02g0340 907 Gene3D - 740 805 - -
Clacu02g0340 907 FunFam Glutamate receptor 573 703 - -
Clacu02g0340 907 SMART GluR_14 463 800 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu02g0340 907 SUPERFAMILY Periplasmic binding protein-like I 20 453 IPR028082 -
Clacu02g0340 907 Pfam Ligand-gated ion channel 800 830 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu02g0340 907 SUPERFAMILY Periplasmic binding protein-like II 438 800 - -
Clacu02g0340 907 FunFam Glutamate receptor 699 802 - -
Clacu02g0340 907 MobiDBLite consensus disorder prediction 884 907 - -
Clacu02g0340 907 PIRSF IGluLR_plant 1 902 IPR017103 -
Clacu02g0340 907 FunFam Glutamate receptor 141 299 - -
Clacu02g0340 907 Gene3D - 44 390 - -
Clacu02g0340 907 Gene3D - 141 415 - -
Clacu02g0340 907 Gene3D - 456 572 - -
Clacu02g0340 907 FunFam Glutamate receptor 457 573 - -
Clacu02g0340 907 CDD GluR_Plant 460 798 - -
Clacu02g0340 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 889 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Clacu02g0340 907 Pfam Receptor family ligand binding region 43 400 IPR001828 -
Clacu02g0340 907 Pfam Bacterial extracellular solute-binding proteins, family 3 472 583 IPR001638 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0340 Clacu-Chr2:3105105 Clacu02g0891 Clacu-Chr2:10914865 4.90E-252 dispersed
Clacu01g2165 Clacu-Chr1:33115803 Clacu02g0340 Clacu-Chr2:3105105 9.90E-282 wgd
Clacu11g2067 Clacu-Chr11:31582500 Clacu02g0340 Clacu-Chr2:3105105 9.40E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0340 K05387 - csv:101208602 1573.91