Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0346 ATGGCATCGGCGCAGAACCCAGCGCCGAACGTGGATCTCTTCGATGCATACTTTCGACGTGCCGATTTGGACCGCGATGGTCGAATTAGTGGCGCTGAAGCGGTTGCCTTCTTTCAAGGCTCCGGATTGCCCAAACAGGTTCTTGCTCAGATTTGGGCGCTTTCGGACCCTAGACAGATTGGTTTCCTTGGTCGGGCGGAGTTTTATAATGCCCTTAGGCTGGTCACTGTAGCACAGAGTAAGAGGGAATTAACTCCGGATATTGTGAAAGCAGCATTGTTTAGCCCAGCTGCAGCTAAAATACCAGCACCACAAATAAATTTCAATACCCAGCCTGCACCTCAGTTCAATTCTACTGCGGCAGTACCTACGCCTCAGAGTGGCATTGTTGCACAAACGCCCTCCCTAAGTTCTGGGTTGGAATCACAGGTTCCTCAAAATGTTACTACAAATGTTCCGCCGGTTTCTTCTAGAGAGAGTCAATCTGCAAGGCCTCCGTTGGCAACTTCAAATTCTACTTTCCATTCCGCACAGGGAATTCCAGGAGTAGGCACTGTTTCGGGGCCACCTCCGACAAATTCAAGCATTTCAAATGATTGGGTTAGTGAACGTGCCAGTGGAGTTCAAGGGACACCCGGACAACCTCCGAATAGAGGAGTCAGTCCTGCTGGAACACAGGTCGGATTTGGGCAATCAAGTACAGGACTAACAACTTCTCTGCCCCCAAGGCCTCAGTCTGCTCCTGGGGTAACACCGGCTACACCATCACCTGTGGAGAGTAAAGTGCGAGGTGTTTCTGGAAATGGGACTGCTTCTGGATCTTATTTTGGAAGAGATGCCTTTGGTGCAACCCCAGTTCCCTCAAAACAAGATGTCCCTGCTGGCAATAAGACTTCCACGGCATTCCCGGTTCCTGTATCTTCTGTTACACAACCAATAGTTAGAGCAAGTTCCCTTGACTCTTTGCAGAATTCATTTATGAAACCACCTCTTGCTAATCAGGCCCAACGGAACCAGGCACTTGGGAAGCCCAATCCACAGAGCGTACTGCAATCTGCTTCCTCTGGATTTTCAACAGGAACTCAGAACTCTGTTTCTGGACAGTCTCAGCGCCCTTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACTAAAGTTTTTGTTGAGGTAGATAAAGATAGAGATGGAAAAATTACCGGTCAAGAAGCACGCAACTTGTTCTTGAGTTGGAAACTGCCAAGAGAGGTTTTAAAGCAAGTCTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATCGCACTCTATTTGTTGGAGCGGCATAGGGAAGGGCACATTCTTCCTGCTATGCTTCCTAGCAACATCATGTTTGATTTTTCCAGCAACGGTCATCCTGTGACTCCAGCTGCATCTAACTATGGCAATGTAGCTTGGAGACCCGCAGCTGGTTACCAGCAGCACCAAGGGGTTCCTGGGTCTGGTAATCTGCAGGGAGCTCCTACAGTTGGAGTACGTCCACCTATACCTGCTACTGCTTCCCCAGTTGAGGGTGAGCCACAGACCAATCAACCTAAATCAAAGGTTCCTGTGCTGGAGAAAAATCTTGTCAGTCAGCTTAGTACAGAGGAGCAGAACTCCCTCAACTCGAAGTTTCAAGAAGCAGCAGATGCTGAGAAAAAGGTTGAAGAATTGGAGAAAGAAATTTTGGACTCGAGACAGAAAATTGAGTATTATCGTACTAAAATGCAGGAACTTGTTTTGTACAAGAGCAGATGTGACAATCGGCTGAATGAAATATCTGAAAGAGTGTCTTCAGATAAACGTGAGGTAGAGTCCCTTGCTAAGAAATATGAAGAGAAATACAAACAATCTGGTGATGTAGCCTCCAGATTAACTGTTGAAGAAGCTACATTCCGTGATATACAGGAAAAGAAGATGGAACTGTATCAGGCGATTGTAAAGATGGAACAAGATGGTACTGCAGATGGTGTTCTTCAGGCTCGTGCTGATCGTATTCAGTCAGATATTGAAGAGTTAGTGAAATCTCTCAATGAACGCTGCAAAAGTTACGGTTTACGTGCAAAACCAATAACTCTGAGTGAACTTCCTTTCGGTTGGCAGCCTGGCATCCAAGTGGGAGCTTCTGACTGGGATGAGAATTGGGATAAATTTGAAGAGGAAGGTTTCTCTGTTGTCAAGGAGCTCACTCTTGATGTGCAAAATGTCATTGCCCCTCCTAAGCAGAAATCTAAGTCAGTTCAAAAAGGAAAACTTGACAGCCAAAACGCTACACCTGCAACGGATGATGATACCAAGGAAGGAGATTCTGCACCAAATGCTGGTACCAAGAGAGAGAAACTTCCTAGTATGGATGAAACAGCTGTTGAAAATGGTTCTGCACACGATAATAAAAGTGAAGATGGTTCAGCCAAAAGTGCTCCTAACAGCCCCTTTGCACCCAAAAGTGCTCCAAACAGCCCCTTTGAAAACAAAAGTGCTCCTAGCAGCCCCTTTGCAAGTAGTGTTATTGGAAGTCCCAAGGAATATATGGATTCCAATTTTGGAAAGACTGCTGGCTTTGATGCTTCACCCCGTGATAAGGACGCTTTAAGTGATCACGGAGGTGCAGGATCTGTGTTTTCTCGTGACAAGAGCTATGATGAACCAGCGTGGGGAACATTTGATGCGAACGATGATATTGACTCTGTTTGGGGCTTTAACGCAGGAGGTTCCCCCAAGATCGACAATGACGTAAACCGGGACAACTATTTTTTCGATTCTGGAGATTTGGGCTTGAATCCTATTAGAACAGATCCATTCCAGGCTAAGCGAAGCACATTTGCTTTTGACGAGTCTGTTCCTAGCACCCCACTCTTCAACTCGGGCAATTCACCGCATAATTACCACGAGGGATCAGAGCCAAGCTTTGACAGCTTCTCAAGGTTCGATTCTTCCAGCATTCACGACAGTGGTTTTTTCCCTCCGCGTGACACATTTACACGGTTCGACTCAATGCGTAGCAGTAGAGATTTCGACCAGGGTCCTGGATTCTCATCATTTGGTCAATTTGATACACCGCATAGCAGTAGAGACTTTGACCAGGGTGGACCCTCATCACTGACACGATTCGATTCAATGCGCAGCAGTAAGGACTTTGATCAGGGATTCCCTTCATTGTCACGATTTGATTCGATGCGCAGCAGCAAGGACTTCGACCAAGGATTCCCTTCATTTTCAAGATTTGATTCGATGCGCAGCAGCAAAGACTTTGATCAGGGTCATGGATTCCCATCATTCGATGATCCAGACCCTTTTGGATCGACAGGGCCGTTTAGGGCGTCCCTCGATAATCAAACTCCAAAGAAAGGATCAGATAATTGGAGTGCCTTTTAG 3414 46.49 MASAQNPAPNVDLFDAYFRRADLDRDGRISGAEAVAFFQGSGLPKQVLAQIWALSDPRQIGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALFSPAAAKIPAPQINFNTQPAPQFNSTAAVPTPQSGIVAQTPSLSSGLESQVPQNVTTNVPPVSSRESQSARPPLATSNSTFHSAQGIPGVGTVSGPPPTNSSISNDWVSERASGVQGTPGQPPNRGVSPAGTQVGFGQSSTGLTTSLPPRPQSAPGVTPATPSPVESKVRGVSGNGTASGSYFGRDAFGATPVPSKQDVPAGNKTSTAFPVPVSSVTQPIVRASSLDSLQNSFMKPPLANQAQRNQALGKPNPQSVLQSASSGFSTGTQNSVSGQSQRPWPRMTQTDVQKYTKVFVEVDKDRDGKITGQEARNLFLSWKLPREVLKQVWDLSDQDNDSMLSVREFCIALYLLERHREGHILPAMLPSNIMFDFSSNGHPVTPAASNYGNVAWRPAAGYQQHQGVPGSGNLQGAPTVGVRPPIPATASPVEGEPQTNQPKSKVPVLEKNLVSQLSTEEQNSLNSKFQEAADAEKKVEELEKEILDSRQKIEYYRTKMQELVLYKSRCDNRLNEISERVSSDKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYQAIVKMEQDGTADGVLQARADRIQSDIEELVKSLNERCKSYGLRAKPITLSELPFGWQPGIQVGASDWDENWDKFEEEGFSVVKELTLDVQNVIAPPKQKSKSVQKGKLDSQNATPATDDDTKEGDSAPNAGTKREKLPSMDETAVENGSAHDNKSEDGSAKSAPNSPFAPKSAPNSPFENKSAPSSPFASSVIGSPKEYMDSNFGKTAGFDASPRDKDALSDHGGAGSVFSRDKSYDEPAWGTFDANDDIDSVWGFNAGGSPKIDNDVNRDNYFFDSGDLGLNPIRTDPFQAKRSTFAFDESVPSTPLFNSGNSPHNYHEGSEPSFDSFSRFDSSSIHDSGFFPPRDTFTRFDSMRSSRDFDQGPGFSSFGQFDTPHSSRDFDQGGPSSLTRFDSMRSSKDFDQGFPSLSRFDSMRSSKDFDQGFPSFSRFDSMRSSKDFDQGHGFPSFDDPDPFGSTGPFRASLDNQTPKKGSDNWSAF 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3156918 3165759 - ClG42_02g0034600.10 Clacu02g0346 242414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 773 815 - -
Clacu02g0346 1137 SMART efh_1 13 41 IPR002048 GO:0005509(InterPro)
Clacu02g0346 1137 SMART efh_1 383 411 IPR002048 GO:0005509(InterPro)
Clacu02g0346 1137 SMART efh_1 417 445 IPR002048 GO:0005509(InterPro)
Clacu02g0346 1137 ProSiteProfiles EF-hand calcium-binding domain profile. 416 448 IPR002048 GO:0005509(InterPro)
Clacu02g0346 1137 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515(InterPro)
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 110 270 - -
Clacu02g0346 1137 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509(InterPro)
Clacu02g0346 1137 CDD EH 14 80 IPR000261 GO:0005515(InterPro)
Clacu02g0346 1137 CDD EH 384 450 IPR000261 GO:0005515(InterPro)
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 187 244 - -
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 513 533 - -
Clacu02g0346 1137 Coils Coil 554 588 - -
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 339 375 - -
Clacu02g0346 1137 Gene3D - 9 104 - -
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 816 849 - -
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 110 180 - -
Clacu02g0346 1137 Pfam EF hand 15 33 IPR002048 GO:0005509(InterPro)
Clacu02g0346 1137 PANTHER EH DOMAIN 5 1006 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 1118 1137 - -
Clacu02g0346 1137 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509(InterPro)
Clacu02g0346 1137 SMART eh_3 2 98 IPR000261 GO:0005515(InterPro)
Clacu02g0346 1137 SMART eh_3 372 468 IPR000261 GO:0005515(InterPro)
Clacu02g0346 1137 Pfam Cytoskeletal-regulatory complex EF hand 374 445 IPR000261 GO:0005515(InterPro)
Clacu02g0346 1137 Coils Coil 603 627 - -
Clacu02g0346 1137 Gene3D - 375 463 - -
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 960 983 - -
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 753 894 - -
Clacu02g0346 1137 SUPERFAMILY EF-hand 369 463 IPR011992 -
Clacu02g0346 1137 SUPERFAMILY EF-hand 10 93 IPR011992 -
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 1011 1137 - -
Clacu02g0346 1137 MobiDBLite consensus disorder prediction 1018 1090 - -
Clacu02g0346 1137 ProSiteProfiles EH domain profile. 380 463 IPR000261 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0346 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g2063 Clacu-Chr11:31554779 Clacu02g0346 Clacu-Chr2:3156918 4.90E-202 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41