Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0348 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGAGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAGCAGCAAGAGCAAGAACAGCAAGACCAGAAGCAAAAACAAAACCACCAAACCAAACGAATCAACAACTCCACCACAATTTCCAACCCTAATTACGCTTCCCCAACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACACCGACGAACTCACTCCCGATGAGGTCGCTGATGACCACGAGGATGCTGAATACAACGAAGAATTGGCTGGGAACGGCCGCGAGAAAAAACTCAAGCTCGTCCTTAGATTGCACTCCCAGAAATCCCCAGTCAATTCCTCGTCTCTCAATTCTTGTGGTTCCGATTCTAATGCGGAGGGAGATGGTAATGCTGCCTCGATTAACAAGAAGCGGAAGATCGGTTCGATTGGGGAGGGATCTAGGATCCAAGACTCCGAGAAGGGTGAAAAGTCCATTTCTGCTACAAACCCATCAGAAACCCTTCAAGGGGTGCATATGGATTCGGGACCCTCGACGCCTTTACCAGATAAGAAGCTTTTAGTCTTCATCCTCGACAGGCTTCAAAAGAAGGACGTCTATGGTGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCACGAAATTATAGATCATCCGATGGATTTTGGAACTGTACGGGAGAAGCTTACTTCTGGAGCTTATAGCACCTTGGAACAGTTTGAAAAAGATGTCCTCTTAATCAGTTCGAATGCAATGCAATATAATTCCCCAGATACTATATATTTTCGGCAGGCACGTACCATACAAGAATTAGCAAAAAAGAATTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGGGGTAGACCGCCGACCAAGAATTTAAAAAAACCATTAGGTAGACCCTCCTTGGAACGCGCTGGTTCAGAGTTTTCCCCAGATGCCACTCTTGCTACTGGTGGTGAAAACACAAATCGGTCCAGTGATTTGAGGAAAGGACTTCATAATTTGGAAAAGCCTAGTTTTGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCTAATAGTGATGCTGCATTTAATTTGTTTAACCAGAGCAGATTTGATAGAAGCGAGGATATTACAGGTTCTGCGCTGAGATTTAATTCCGTGAGACAGGGGAAAAAACCTATTGTCTCCGAGGAGAATAGGCGAAATACATATAAGCAATTTCAAGAGGCAGCTGCTTTGCTAGAACCCTCTGTGTTGAATACATTTGATAGAGAGAGGAAGGTTTTAATGCCAGTTGGACTTTTCTTGGAGCATGCTTATGCACGAAGCCTCGCTCGATTTGCTGCAGATCTTGGATCTGTAGCTTGGACAGTTGCTTCTAAGAAGATTGAAAGATCTTTGCCTTCAGGTTCAAGTTTTGGTCCTGGATGGGTTGTAGAAAATGATACCACACCAAAGAGGGTGTTCCTACCACAAGCTGAGCTTTGTCAAATGTCGACGTTGCAGCCCTTTCTTGGGCATGAAAGTTCGGATCCAGATGTAAAGCCTCTTACTCCTGAACAAAAGGGGGTTCGATCATCTGATAACTCTGAAGCTGATACATCATCCAAGACGCATGACGAGCCTTCTCGTGCCCCCAGTTCAGATGGCCAGATAAACAGGCCTCCCACTGAGTTTGCTGCAGCTTCGTCACCACCATCAAGTACTCGACGATCTTCTGAGCCGTGCAAGGGACAGGCGGAAACAGTTGAAGGATCAAATCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAATCTCAAGGCCTTCATTCCAGAAACACCATCCAACAATCCGCCCTGGTATGAATGGATTCAATGGTGCTTATGGTTTTGATCCCTCTGCTCACAGGGGGAAACTAATCGGACCGTCTGAGCCTGCTGGTGTAAAGCCTCAGTCATCTCAAATGCTTGAGATGATCTCCAGGACCAATGCTAATTTCATCCTTCCAGCAACAACGACCAGCCTGAATCTGAAAGAACTGAAATGTCCCGAAAACAATCCTAGCACAACAAACTCTTCCAGTTCATTGGTTGGGTCGGAGAATGACGCTCTTGTCAACCCAGCAACTGGTCCGCATTCACGAACATATTGGCAGCAGGGACCATCACCACCAGAGAAAACAGATGCAGATGCAGTAGTAACAACAATATACAAACCGGAATCGGTTCCCCCGGACCTGAATGTGAGATTTAAATCTCCAGGATCTCCTAGCTCTAGTAAGGTGGACTCTGCTCACCCTGATTTGGTTTTACAGCTCTGA 2346 45.74 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEQQDQKQKQNHQTKRINNSTTISNPNYASPTPLRRSTRRNPNTDELTPDEVADDHEDAEYNEELAGNGREKKLKLVLRLHSQKSPVNSSSLNSCGSDSNAEGDGNAASINKKRKIGSIGEGSRIQDSEKGEKSISATNPSETLQGVHMDSGPSTPLPDKKLLVFILDRLQKKDVYGVFSEPVDPNELPDYHEIIDHPMDFGTVREKLTSGAYSTLEQFEKDVLLISSNAMQYNSPDTIYFRQARTIQELAKKNFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPSLERAGSEFSPDATLATGGENTNRSSDLRKGLHNLEKPSFADFSGRFSFSSNSDAAFNLFNQSRFDRSEDITGSALRFNSVRQGKKPIVSEENRRNTYKQFQEAAALLEPSVLNTFDRERKVLMPVGLFLEHAYARSLARFAADLGSVAWTVASKKIERSLPSGSSFGPGWVVENDTTPKRVFLPQAELCQMSTLQPFLGHESSDPDVKPLTPEQKGVRSSDNSEADTSSKTHDEPSRAPSSDGQINRPPTEFAAASSPPSSTRRSSEPCKGQAETVEGSNPSSDYNVLESSIPISRPSFQKHHPTIRPGMNGFNGAYGFDPSAHRGKLIGPSEPAGVKPQSSQMLEMISRTNANFILPATTTSLNLKELKCPENNPSTTNSSSSLVGSENDALVNPATGPHSRTYWQQGPSPPEKTDADAVVTTIYKPESVPPDLNVRFKSPGSPSSSKVDSAHPDLVLQL 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3189986 3194672 + ClG42_02g0034800.10 Clacu02g0348 242416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0348 781 CDD Bromodomain 189 283 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 689 731 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 17 42 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 1 16 - -
Clacu02g0348 781 Coils Coil 18 45 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 517 638 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 558 618 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 286 348 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 689 781 - -
Clacu02g0348 781 Gene3D - 187 304 IPR036427 GO:0005515(InterPro)
Clacu02g0348 781 Pfam Bromodomain 196 275 IPR001487 GO:0005515(InterPro)
Clacu02g0348 781 MobiDBLite consensus disorder prediction 1 101 - -
Clacu02g0348 781 SMART bromo_6 182 290 IPR001487 GO:0005515(InterPro)
Clacu02g0348 781 MobiDBLite consensus disorder prediction 113 136 - -
Clacu02g0348 781 SUPERFAMILY Bromodomain 182 294 IPR036427 GO:0005515(InterPro)
Clacu02g0348 781 ProSitePatterns Bromodomain signature. 207 263 IPR018359 -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 43 68 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 113 185 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 286 305 - -
Clacu02g0348 781 MobiDBLite consensus disorder prediction 147 161 - -
Clacu02g0348 781 ProSiteProfiles Bromodomain profile. 201 271 IPR001487 GO:0005515(InterPro)
Clacu02g0348 781 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 780 IPR051831 -
Clacu02g0348 781 PRINTS Bromodomain signature 218 234 IPR001487 GO:0005515(InterPro)
Clacu02g0348 781 PRINTS Bromodomain signature 234 252 IPR001487 GO:0005515(InterPro)
Clacu02g0348 781 PRINTS Bromodomain signature 252 271 IPR001487 GO:0005515(InterPro)
Clacu02g0348 781 PRINTS Bromodomain signature 204 217 IPR001487 GO:0005515(InterPro)
Clacu02g0348 781 MobiDBLite consensus disorder prediction 162 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0348 K22184 - - csv:101218234 1283.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0348 Clacu-Chr2:3189986 Clacu05g1481 Clacu-Chr5:17933959 1.70E-11 dispersed
Clacu09g1086 Clacu-Chr9:10302975 Clacu02g0348 Clacu-Chr2:3189986 1.40E-73 transposed
Clacu11g1521 Clacu-Chr11:26364021 Clacu02g0348 Clacu-Chr2:3189986 6.40E-08 transposed
Clacu11g2058 Clacu-Chr11:31523236 Clacu02g0348 Clacu-Chr2:3189986 6.20E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39