Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0353 ATGAATGCACATATCAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGATCTCGCCATTCCTTTTGAACTTCAAATGATTGAAACTACAACGTCTCTCGACTCCAATCGCCGCCGTCCTCGCAAGAAACGGTCAAGAATAGAAAAAGACTCCACCGTCACCACTGCCGCCGTCTCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCACCCAAGATTACTCCTCCATGTACTGAGTGTGGGAAAAGATTTTGGTCAGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGGGGAATTAATCCGCCTCTTAATTTCCGTCGTTCGATTTCTGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGACTCTTCGTTTACTGAAGAAGATCAAGACATTGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCGATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCGCTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATCGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTTGGCCATGACAGGAGTATCAATCTGGAGAATAGAATGTCGATGATGATTTTAGGAACAGCAGAGCATAAATGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGTTTTGTTAATTTGGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA 855 44.09 MNAHINSVSIASSSSSPLDLAIPFELQMIETTTSLDSNRRRPRKKRSRIEKDSTVTTAAVSSKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRSISVSPFSPNIATDLEDSSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLFGHDRSINLENRMSMMILGTAEHKCSGHKRFHWENNAAAEEGFVNLDLNMPAPLEDGSSSSYSSSLTLDLRLGL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3238080 3238934 - ClG42_02g0035300.10 Clacu02g0353 242421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0353 284 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Clacu02g0353 284 MobiDBLite consensus disorder prediction 34 74 - -
Clacu02g0353 284 SUPERFAMILY beta-beta-alpha zinc fingers 80 188 IPR036236 -
Clacu02g0353 284 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 33 282 - -
Clacu02g0353 284 Gene3D Classic Zinc Finger 39 193 - -
Clacu02g0353 284 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Clacu02g0353 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Clacu02g0353 284 SMART c2h2final6 166 188 IPR013087 -
Clacu02g0353 284 SMART c2h2final6 79 101 IPR013087 -
Clacu02g0353 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Clacu02g0353 284 Pfam C2H2-type zinc finger 165 189 IPR013087 -
Clacu02g0353 284 Pfam C2H2-type zinc finger 81 103 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0353 Clacu-Chr2:3238080 Clacu05g0026 Clacu-Chr5:548361 8.70E-14 dispersed
Clacu02g1023 Clacu-Chr2:15414180 Clacu02g0353 Clacu-Chr2:3238080 8.60E-25 transposed
Clacu10g0372 Clacu-Chr10:4723798 Clacu02g0353 Clacu-Chr2:3238080 3.30E-09 transposed
Clacu01g2156 Clacu-Chr1:33067933 Clacu02g0353 Clacu-Chr2:3238080 5.80E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47189 PF13912 zf-C2H2_6 6.90E-10 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0353 - - - 0.0