Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0354 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGATGGCGTTGGTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCGGTGACGACGAGTCTAGATTCCACGGTTGGGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAACAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACCTTAGTTAGTTATGGTTTACAGGCAGATCACACGATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCTCCTGCGCCTGCTTCTAATGTTAATAGTAGAAGTTCTGACACTGCTCCTGGTGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTTTTGGAAATGCTGGCCTTGGTGCATCATTATTTCCTGGATTGGGTTTCAATCCTCTCGGTGGGGTTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAATTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTCAATGACCCTGGAATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATCGAATCTTCTCCAGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACAATGGCTGGAAATGCTGGAAATGATTTGAGTTCAAACCCATTTGCTGCTCTCTTGGCAAACCAAGGGGGCGCACAAGCGAGGAATGAGTCCAATAATTCTTCAACTACAGGATCAGAAACAACAGGAACTGCTGCTCCGAATACAAATCCACTTCCTAATCCGTGGGGTAATAGTGCTAGTGGAGGAACTCAGACCACAACCACACAGCCTACTCCAGCAGGTGATGCAAGGGCTCCTGGTATTGGGGCTTTAGGAGGGGCTGGTCGTACAAATGTGGATCGATTTGCTGGTGCTGTGCCAGACCCGGCTCAGCTGAACCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGCCTACTCTCCAACCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCGATCCAGCAGACCCTCCTCTCTACCTTAAATCGACAGCCATCATCTCAAGATTCTGCTCAAACAGGTGCTGCTGCAGGTGTTCCTAGCACTGCTGGATTGGAGATGTTAATGAACCTCTTTGGTGGGCTCGGTGCTGGTGGGTTGGCTGTTCCGAGCAATCCCAACGTGCCCCCAGAAGAACTATACGCAACTCAACTCTCGCAGCTCCAAGAGATGGGTTTCTTTGACACCCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTTCATGCTGCTGTCGAGCGACTGCTGGGAAATCTCGAGCAGTAA 1659 46.78 MGADGDSSEHRVDGVGEEGGVSVTVNIRCSNGSKFSVTTSLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPPAPASNVNSRSSDTAPGVTRGVGSNESGAFGNAGLGASLFPGLGFNPLGGVGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLSSNPFAALLANQGGAQARNESNNSSTTGSETTGTAAPNTNPLPNPWGNSASGGTQTTTTQPTPAGDARAPGIGALGGAGRTNVDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQTLLSTLNRQPSSQDSAQTGAAAGVPSTAGLEMLMNLFGGLGAGGLAVPSNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLEQ 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3248111 3252128 + ClG42_02g0035400.10 Clacu02g0354 242422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0354 552 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515(InterPro)
Clacu02g0354 552 Gene3D - 492 551 - -
Clacu02g0354 552 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515(InterPro)
Clacu02g0354 552 CDD UBA_PLICs 510 548 - -
Clacu02g0354 552 Gene3D - 195 253 - -
Clacu02g0354 552 PRINTS Ubiquitin signature 54 74 IPR019956 -
Clacu02g0354 552 PRINTS Ubiquitin signature 75 96 IPR019956 -
Clacu02g0354 552 SMART uba_6 510 548 IPR015940 -
Clacu02g0354 552 MobiDBLite consensus disorder prediction 297 363 - -
Clacu02g0354 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 505 549 IPR015940 -
Clacu02g0354 552 PANTHER UBIQUILIN 20 548 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Clacu02g0354 552 SMART CBM 200 239 IPR006636 -
Clacu02g0354 552 SMART CBM 148 187 IPR006636 -
Clacu02g0354 552 SMART CBM 411 446 IPR006636 -
Clacu02g0354 552 SMART CBM 378 407 IPR006636 -
Clacu02g0354 552 FunFam Ubiquitin domain-containing protein DSK2b 493 551 - -
Clacu02g0354 552 SUPERFAMILY Ubiquitin-like 22 109 IPR029071 -
Clacu02g0354 552 MobiDBLite consensus disorder prediction 100 123 - -
Clacu02g0354 552 MobiDBLite consensus disorder prediction 297 349 - -
Clacu02g0354 552 FunFam Ubiquitin domain-containing protein DSK2b 20 107 - -
Clacu02g0354 552 CDD Ubl_Dsk2p_like 23 95 - -
Clacu02g0354 552 Pfam Ubiquitin family 25 93 IPR000626 GO:0005515(InterPro)
Clacu02g0354 552 Gene3D - 21 106 - -
Clacu02g0354 552 SMART ubq_7 23 94 IPR000626 GO:0005515(InterPro)
Clacu02g0354 552 Pfam UBA/TS-N domain 510 546 IPR015940 -
Clacu02g0354 552 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
Clacu02g0354 552 MobiDBLite consensus disorder prediction 97 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0354 K04523 - - csv:101210644 965.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0354 Clacu-Chr2:3248111 Clacu10g0029 Clacu-Chr10:710071 1.30E-130 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39