Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0365 ATGGATGCCTCTACTTTGAGCCCAAGAAACTCTCAGCATGTTCGTTCAAAGAGTGAGCCCTCAAATCCACACCCGATCATCAGCCAAGTAGATGAGCAATTGAGAAGATTAAGGGATTCTGAAGCCACATCTTCTTCTCTATGCCATAGACTTGGAGCCCTTCAAGATTTGTACGATTGTGTTGATAAGTTGCTTGTTTTGCCCAACTCCCGACAAGCTTTGGCCCAAGGGAATGAAAAGGAAGTACTAGATGACTTACTAGAAGGATCTCTCATGCTGCTGGATTTGTGCGATACAGCTAAGAATGGCTTGTTGCAAACCAGAGAATGCGCACATGAATTAGAGTCAATTATGCGTAGAAGGCGAGGTGAAATTTGTACTTCTAGTTCACTTCAGAAATCAAGGAAGATGATAAAGAAAACAATCCACAAAGACTTGAAAGGAATGGAAGGCGAACATTTCCACAAAGTTCATGGGAGCTTGACCATTGTCAACTTGATAAAAGAGGTTGAAGTAATCACATACCACAGTATGGAATCCTTGTTGTCCTTTATAGCAGGACCAAAGTTGCCGTCAAAATGGAGCTGCTGGTCTTCGGTTTCCAAGCTTGTTCAACCCAAAAGAGTAGCCTGCATAAGTGAAGAAACAGAAATAAGTGTAGTAGAAAGATTGGACTTGGCATTAAGTTCAATTATCAATCACCAAACCAACAAAGAATTCCAAATTCAAGATGAAGGCATGCAGAATTTTCTGAGGGAGTGTGGGGAAAGCATTAAGGAAGTTGAAGAAGAACTTGAGGGTCTTTATAGGTTTATAATCAAAACAAGAGTATCTCTTCTCAACATGTTCAACAACTAA 858 40.56 MDASTLSPRNSQHVRSKSEPSNPHPIISQVDEQLRRLRDSEATSSSLCHRLGALQDLYDCVDKLLVLPNSRQALAQGNEKEVLDDLLEGSLMLLDLCDTAKNGLLQTRECAHELESIMRRRRGEICTSSSLQKSRKMIKKTIHKDLKGMEGEHFHKVHGSLTIVNLIKEVEVITYHSMESLLSFIAGPKLPSKWSCWSSVSKLVQPKRVACISEETEISVVERLDLALSSIINHQTNKEFQIQDEGMQNFLRECGESIKEVEEELEGLYRFIIKTRVSLLNMFNN 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3340250 3341107 + ClG42_02g0036500.10 Clacu02g0365 242433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0365 285 PANTHER OS06G0725500 PROTEIN 11 283 - -
Clacu02g0365 285 Pfam Protein BPS1 51 282 IPR004320 GO:0048364(InterPro)|GO:0048367(InterPro)
Clacu02g0365 285 MobiDBLite consensus disorder prediction 1 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0365 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0363 Clacu-Chr2:3334945 Clacu02g0365 Clacu-Chr2:3340250 8.90E-115 dispersed
Clacu02g0365 Clacu-Chr2:3340250 Clacu02g0370 Clacu-Chr2:3355667 4.00E-75 dispersed
Clacu02g0364 Clacu-Chr2:3337548 Clacu02g0365 Clacu-Chr2:3340250 6.40E-67 tandem
Clacu02g0365 Clacu-Chr2:3340250 Clacu02g0366 Clacu-Chr2:3342741 5.70E-82 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g248 . . . . . . . . Cmo19g00803 . . . . . . . . Bhi05g01613 Tan02g0597 Cmetu01g0372 . . . . Cla02g00365 . . Cco02g0379 Clacu02g0365 Cmu02g0362 Cre02g0694 . . . . . Csa07g00165 . Cme01g01168 . . . . . . . . . . . . Cma19g00788 . . . . . . . . . . . . . . . . . . Lsi11g01268 . Chy01g00625 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217