Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0379 ATGCCTTTCTTCCTCCCTCTTCTCATCCTCTCACTCTTCTCTTCTGCCTCTGCTTGTGATCGTTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGTCCGCCGGTTTATATAGAGGCGCCTGTGGCTATGGCGATCTTACATTGCAGCTCTCAAATGGCTACTTCTCTGCCATTATGCCTCCTCTTTACAAGTACGGCGCTGGGTGTGGCGCTTGTTTTCAAGTAAGATGCAAGAATGAGAAAATTTGTAGTAAAGAAGGGACGAAAATTATTGTCACAGATCGAAATGATAATACATATACAGGATTGGTTCTTAGTCAGAAGGCTTTTGGTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTATTGAGTTATGGAGTTGTGGATGTTGAATTCAAAAGGATTCCTTGTGAATACAATAACAAAAACTTGTTGGTTAGAGTGGAAGAATGGAGTCAATATCCTAATTACTTAGCCATTAAATTGCTTAACCAAGGTGGCCAAACAGAAATAGTAGCGATCGATATAGCTCAGGTTGGTTACTCGAATTGGGATTATATGGGTAGAAATTATGGAGCTGTATGGGAGACTAAAAAACCATTACCGAAAGGACCATTGCAGTTGCGGTTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAGTACGTACTTCCTGCTGACTGGAGACCTGGATTGATTTACGATACTGGAGTTCAAATCTCCGACATTGCTAAAGAAGGTTGTCCAACAGAACAATGTGGTGATGGACAATGGAAACGATAG 798 42.23 MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIIVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFKRIPCEYNNKNLLVRVEEWSQYPNYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQISDIAKEGCPTEQCGDGQWKR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3409612 3410859 - ClG42_02g0037900.10 Clacu02g0379 242447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0379 265 Gene3D - 141 245 IPR036749 -
Clacu02g0379 265 Pfam Expansin C-terminal domain 150 230 IPR007117 -
Clacu02g0379 265 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Clacu02g0379 265 PANTHER EXPANSIN-B3 9 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Clacu02g0379 265 Pfam Lytic transglycolase 59 133 IPR009009 -
Clacu02g0379 265 Gene3D - 10 140 IPR036908 -
Clacu02g0379 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Clacu02g0379 265 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Clacu02g0379 265 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Clacu02g0379 265 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Clacu02g0379 265 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Clacu02g0379 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Clacu02g0379 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Clacu02g0379 265 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0379 Clacu-Chr2:3409612 Clacu02g0383 Clacu-Chr2:3445236 4.80E-99 dispersed
Clacu02g0379 Clacu-Chr2:3409612 Clacu02g0380 Clacu-Chr2:3416739 2.20E-96 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0379 - - - 0.0