Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0380 ATGGCTTGGTTTCTTGATTCTCTCTTTCTCTTTTTCATTTCTTCTGCTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGGGCATGTGGTTATGGCAATGTGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCCCTTTATAGACAAGGAGCTGGTTGTGGTGCTTGCTATCAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCGTAGGGGCTAAAGTGGTATTGACAGATCAAAATAACGATAACGTGACAGATCTTGTTCTTAGTAAGAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGGTGCCTTGCGAATACAAATATAAGAATTTGCTGGTGCAAGTGGAAGAAGCAAGTTATAATCCATTTTACTTGGCTATTAAATTCTTGTACCAAGGTGGCCAAACAGATATAGTAGCTGTGGACATAGCTCAAGTAGGCACCTCTGATTGGAGCCATATGAACAGAAATTATGGAGCTGTCTGGGAAACTAACAACATACCTGAAGGAGCATTACAATTGAGGATGGTAGTGACTTCTGGATACGATGGAAAGTGGGTTTGGGCAAAATCCGTACTTCCTACTAATTGGAAAAGTGGAGCAATTTACGATACTGGAGTTCAAATCAAAGATATTGCGAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATAACCTATGGAAATGA 789 40.81 MAWFLDSLFLFFISSANACDRCVYQSKASHLYDSPTTYGGACGYGNVALQFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCNTVGAKVVLTDQNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKRVPCEYKYKNLLVQVEEASYNPFYLAIKFLYQGGQTDIVAVDIAQVGTSDWSHMNRNYGAVWETNNIPEGALQLRMVVTSGYDGKWVWAKSVLPTNWKSGAIYDTGVQIKDIAKESCPPWQCGDNLWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3416739 3418819 - ClG42_02g0038000.10 Clacu02g0380 242448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0380 262 Gene3D - 140 244 IPR036749 -
Clacu02g0380 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Clacu02g0380 262 Gene3D - 13 139 IPR036908 -
Clacu02g0380 262 CDD DPBB_EXLA_N 14 140 - -
Clacu02g0380 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Clacu02g0380 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Clacu02g0380 262 PANTHER EXPANSIN-B3 11 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Clacu02g0380 262 SUPERFAMILY Barwin-like endoglucanases 11 141 IPR036908 -
Clacu02g0380 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Clacu02g0380 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Clacu02g0380 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Clacu02g0380 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Clacu02g0380 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Clacu02g0380 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Clacu02g0380 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0380 Clacu-Chr2:3416739 Clacu02g0383 Clacu-Chr2:3445236 1.90E-111 dispersed
Clacu02g0379 Clacu-Chr2:3409612 Clacu02g0380 Clacu-Chr2:3416739 2.20E-96 tandem
Clacu02g0380 Clacu-Chr2:3416739 Clacu02g0381 Clacu-Chr2:3422969 8.80E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0380 - - - 0.0