Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0382 ATGTATTATTGGTTCCTCACCTTCCTCTTCTTGCTCGTCTCCTCTACTACGGCTTCTTTTCCTCCTTGTAATCGTTGTGTTCGTCAATCCAAAGCTGCTCATTACTATCAAGATTCACCTACTTCATATGGAGGTGCTTGTGGTTATGCAAATTTAGCATTGCAAATCTCTCAAGGCTACTTTGCAGCTGCTGTCCCTTCCCTTTACAAGGGAGGAGCAGGTTGTGGCGCTTGCTACCAAGTAAGATGCAAAGACAAACATCTATGCAATACTGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCAATGGCTTTAAGAGGAAAAGCTCAACAACTTTTGAATACTGGACTCGTCGATGTAGAATACAAAAGGATACCTTGTGAATACAAAAATAAAAATCTATTGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAAGTGGTTAACATAGCTCAGGTGGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATTAATAGTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAGTAAGTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTTTGTGATCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGATGATGGACAATGGAAATAA 807 38.04 MYYWFLTFLFLLVSSTTASFPPCNRCVRQSKAAHYYQDSPTSYGGACGYANLALQISQGYFAAAVPSLYKGGAGCGACYQVRCKDKHLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMALRGKAQQLLNTGLVDVEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQVVNIAQVGLPKWRPMKRNYGPIWDINSVPEGGLQLRMVVSSRYDNGKWIWAGFVIPADWKNGEIYDTGVQINDIAFEYCPPWQCDDGQWK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3435313 3436789 - ClG42_02g0038200.10 Clacu02g0382 242450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0382 268 CDD DPBB_EXLA_N 23 145 - -
Clacu02g0382 268 Gene3D - 145 250 IPR036749 -
Clacu02g0382 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 245 IPR007117 -
Clacu02g0382 268 PANTHER EXPANSIN-B3 8 251 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Clacu02g0382 268 SUPERFAMILY PHL pollen allergen 155 244 IPR036749 -
Clacu02g0382 268 SUPERFAMILY Barwin-like endoglucanases 18 147 IPR036908 -
Clacu02g0382 268 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Clacu02g0382 268 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Clacu02g0382 268 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
Clacu02g0382 268 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576(InterPro)
Clacu02g0382 268 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Clacu02g0382 268 Gene3D - 15 144 IPR036908 -
Clacu02g0382 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Clacu02g0382 268 Pfam Lytic transglycolase 63 138 IPR009009 -
Clacu02g0382 268 Pfam Expansin C-terminal domain 159 234 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0382 Clacu-Chr2:3435313 Clacu02g0386 Clacu-Chr2:3461283 1.10E-98 dispersed
Clacu02g0381 Clacu-Chr2:3422969 Clacu02g0382 Clacu-Chr2:3435313 2.80E-108 tandem
Clacu02g0382 Clacu-Chr2:3435313 Clacu02g0383 Clacu-Chr2:3445236 2.20E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0382 - - - 0.0