Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0383 ATGGCTTGGTTCCTTATCTTATTCTTCGTCTTCCTCATCTCTTCTGCTACTGCTTGCGATCGTTGTATTCACCGATCCAAAGCTACTCATTATTATGGAGATTCACCTACTTCATATGGAGGAGCATGTGGGTATGGAGACTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTACAAACAAGGAGCTGGTTGTGGTGCGTGTTTTCAGGTAAGATGTAAAGACAAAAGACTATGCAATACAGCAGGGACCAAAGTAGTGTTGACAGATCAAAATTATGATACAAGAGCAGATTTTGTTCTAAGTAGAAAGGCTTTTTCAGCCATGGCTTTGAAAGGAAAAGATCAACAACTTTTGAATACTGGGATTGTTGATGTAGAATACAAGAGGATACCTTGTGGATACAAAAACAAAAATTTGGCCGTACGAGTTGAAGAATCAAGTTATAATCCAAATTATTTAGCCATTAAACTTTTGTACCAAGGTGGCCAAACAGAGATAGTGGCTGTCGAGATAGCCGAGGTTGGTTCATACGAATGGGTGAGCTTAAGGAGAAACTATGGAGCAGTTTGGGATACAAATAAAGTACCCAAAGGAGCATTACAAATGAGAATGGCATTTACTTCAGGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTTGATTGGAAAATTGGAGCCATTTACGATACTGGAGTTCAGATTTATGATATTGCTAAAGAGGGTTGCCTTGCATCACAGTGTGGTGATAAACCATGGAAATAA 792 39.65 MAWFLILFFVFLISSATACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGTKVVLTDQNYDTRADFVLSRKAFSAMALKGKDQQLLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAEVGSYEWVSLRRNYGAVWDTNKVPKGALQMRMAFTSGYDGKWVWAEYVLPVDWKIGAIYDTGVQIYDIAKEGCLASQCGDKPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3445236 3447987 - ClG42_02g0038300.10 Clacu02g0383 242451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0383 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Clacu02g0383 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Clacu02g0383 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Clacu02g0383 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Clacu02g0383 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Clacu02g0383 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Clacu02g0383 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Clacu02g0383 263 Pfam Lytic transglycolase 59 134 IPR009009 -
Clacu02g0383 263 Gene3D - 141 245 IPR036749 -
Clacu02g0383 263 Gene3D - 12 139 IPR036908 -
Clacu02g0383 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g0383 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g0383 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g0383 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g0383 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Clacu02g0383 263 CDD DPBB_EXLA_N 14 141 - -
Clacu02g0383 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Clacu02g0383 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Clacu02g0383 263 PANTHER EXPANSIN-B3 7 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0379 Clacu-Chr2:3409612 Clacu02g0383 Clacu-Chr2:3445236 4.80E-99 dispersed
Clacu02g0380 Clacu-Chr2:3416739 Clacu02g0383 Clacu-Chr2:3445236 1.90E-111 dispersed
Clacu02g0383 Clacu-Chr2:3445236 Clacu02g0386 Clacu-Chr2:3461283 7.30E-100 dispersed
Clacu02g0382 Clacu-Chr2:3435313 Clacu02g0383 Clacu-Chr2:3445236 2.20E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0383 - - - 0.0