Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0386 ATGGCTTTGTTTGTTTGCTTTCTCCTTTGCCTCCTCACACCATTTGCTATTGCTTGTGATCGTTGTGTTCACCAATCCAAAGCTGCCTATTTCTCAAATGATTCACCACTTTCATCTGGCGCTTGTGGCTATGGCTCCTTAGCTATTAGCTTGCTTGACGGACACCTCGCTTCGGGTGTTCCTTCCCTTTACAAAGAGGGTGTTCGTTGTGGTGCATGTTATCAGATAAGGTGCAAGGACAAGAAACTTTGCAGCAGAAGAGGGACCAAAGTAATTTTGACTGATCACAATATACACAACAATGGAACTGATTTTATTTTGAGTAAGGAAGCTTTCTCTGGCATGGCTCAGAAGGCCCATCAAAAGAATATTTTGAGACATGGGACTCTTGACATTGAGTACAAAAGGATGCCTTGTGAATACAAAAAACAAAATTTGTCAGTACGAATTGAAGAATCAAGCCAAAAGCCCCATCACATGGCTCTTAAGTTCTTATTCCAAGGTGGGCAAACAGATATAGTTTTGGTTCATCTTCATCCGGTGAATCGGGTTAGAACGGCGTTCATGAGCAGAAGACATGGGACCGCGGTGTGGGAAATCGACACGATGCCGGAAGCGGCGGTGATGTTTCAAATAAGGGTGATTTCGGGGTTCGACGGGATGTGGATTAGGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATAGACGCCATTGCCAAAGGACAAGAGAGCTGCAGAGAGTGCGATGAAGGGCATTGCTTCTTTGTTCTCTTTATCTCTTTTGTTAATGCTTGCGATCAATGCATTCATCAATCTAAAGAGGCTTATTACTATAGTGATGCACCTATTACATATGGGGCATGTGGCTATGGTTCTTTGGCAAATGAATCTTTCCATGGATACATTGCTGGTGCGGTGCCTTTGCTATACAAACAAGGAGCTGGTTGTGGTGCTTGCTTTCAAGTGAGGTGCAAGAACAAGAAGCTGTGCAGTCCAATAGGAGCTAAAATAGTTTTGACAGATCAAAATTATGATAACCGAACTGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGAAATGGCTCGATGGGGCAAGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATTGAATACAAGATGGTACCATGCGGATACAAAAACAAAAATTTGTTGGTGAGAATAGAAGAATGGAGCAACAAGCCTTACTACTTGGCCATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCAGATTGGGAAGCTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAAAGTACCTGAAGGAGCATTGCAACTAAGAATTGTGGTAGCTTCAGGATATGATAATGAGAATTGGATTTGGACAAATTATGAAATTCCTGCTGATTGGAAAAATGGAGAAACTTATGATACAGGGATTCAAATTGAAGATATTGCCAAAGAATTTTGTTCCCCAAGAGAGTGTGGTGATAGAATATGGAAATGA 1560 42.37 MALFVCFLLCLLTPFAIACDRCVHQSKAAYFSNDSPLSSGACGYGSLAISLLDGHLASGVPSLYKEGVRCGACYQIRCKDKKLCSRRGTKVILTDHNIHNNGTDFILSKEAFSGMAQKAHQKNILRHGTLDIEYKRMPCEYKKQNLSVRIEESSQKPHHMALKFLFQGGQTDIVLVHLHPVNRVRTAFMSRRHGTAVWEIDTMPEAAVMFQIRVISGFDGMWIRAERAVPADWKPGMIYDLGVQIDAIAKGQESCRECDEGHCFFVLFISFVNACDQCIHQSKEAYYYSDAPITYGACGYGSLANESFHGYIAGAVPLLYKQGAGCGACFQVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKMVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEALKRNYGAIWDTSKVPEGALQLRIVVASGYDNENWIWTNYEIPADWKNGETYDTGIQIEDIAKEFCSPRECGDRIWK 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3461283 3469053 - ClG42_02g0038600.10 Clacu02g0386 242454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0386 519 Gene3D - 270 394 IPR036908 -
Clacu02g0386 519 Gene3D - 17 140 IPR036908 -
Clacu02g0386 519 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 413 496 IPR007117 -
Clacu02g0386 519 SUPERFAMILY PHL pollen allergen 399 495 IPR036749 -
Clacu02g0386 519 Pfam Lytic transglycolase 57 134 IPR009009 -
Clacu02g0386 519 Pfam Lytic transglycolase 318 389 IPR009009 -
Clacu02g0386 519 PRINTS Expansin/Lol pI family signature 316 334 IPR007118 GO:0005576(InterPro)
Clacu02g0386 519 PRINTS Expansin/Lol pI family signature 294 312 IPR007118 GO:0005576(InterPro)
Clacu02g0386 519 PRINTS Expansin/Lol pI family signature 482 496 IPR007118 GO:0005576(InterPro)
Clacu02g0386 519 PRINTS Expansin/Lol pI family signature 382 398 IPR007118 GO:0005576(InterPro)
Clacu02g0386 519 PRINTS Expansin/Lol pI family signature 441 455 IPR007118 GO:0005576(InterPro)
Clacu02g0386 519 PANTHER EXPANSIN-B3 265 502 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Clacu02g0386 519 CDD DPBB_EXLA_N 14 141 - -
Clacu02g0386 519 SMART dpbb_1 312 389 IPR007112 -
Clacu02g0386 519 SMART dpbb_1 57 134 IPR007112 -
Clacu02g0386 519 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Clacu02g0386 519 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Clacu02g0386 519 SUPERFAMILY Barwin-like endoglucanases 263 398 IPR036908 -
Clacu02g0386 519 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Clacu02g0386 519 CDD DPBB_EXLA_N 270 396 - -
Clacu02g0386 519 Gene3D - 396 500 IPR036749 -
Clacu02g0386 519 Gene3D - 141 245 IPR036749 -
Clacu02g0386 519 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 295 399 IPR007112 -
Clacu02g0386 519 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Clacu02g0386 519 Pfam Expansin C-terminal domain 405 471 IPR007117 -
Clacu02g0386 519 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0381 Clacu-Chr2:3422969 Clacu02g0386 Clacu-Chr2:3461283 8.40E-169 dispersed
Clacu02g0382 Clacu-Chr2:3435313 Clacu02g0386 Clacu-Chr2:3461283 1.10E-98 dispersed
Clacu02g0383 Clacu-Chr2:3445236 Clacu02g0386 Clacu-Chr2:3461283 7.30E-100 dispersed
Clacu02g0386 Clacu-Chr2:3461283 Clacu03g1264 Clacu-Chr3:24267424 4.70E-82 dispersed
Clacu02g0385 Clacu-Chr2:3454160 Clacu02g0386 Clacu-Chr2:3461283 3.90E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0386 - - - 0.0