Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0409 ATGGATACGCTTAAGAACTCCTTCAAAGGTAATGTATCTTTCAAGCATACCAGGAAGATTTCTGCTGGCGTAGCTGGTAGCGAAATTAATCACGAGGAGCTCCCCATTCTTCTCAATCGCGAACCTACGGGTCATCGTCGCCGTCTTAGGGATCGTCATCCGGTGAACGATTCTGATCCATCTGACCGAACAGAGGTCATTCTCAAGATCGACGATGGCGGTTCTTCGGCTGTTTCCAGACATCAGGACCCTGCCGGCAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTGCGATTTCTGGAACAATGATGCAATTGGAATTGGGGAAAGTGCGAGTAGGGTTAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGTACAGCCTGGTTATGGTATGGAGGATCCACCAACGAAGCTGATTGGTGAGTTTCTTCATAAGCAGAAAATTGGGGGAGAAACGACTTTGGATATGGATTTAGAAATGGAGGAGTTGAGGCCTGATAGGATTATACCTCCATTGGCAGAATCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCATTCCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGATGAGAAGGCGGTATAGAGATTCTCGCGATTTTCAGGAAGAGTATAAAGGAGGACAACCGCCACGGCAGCAATCGCATCATGAACGTCTTGGATCTCCGACTATCTCTGGGGTTCAGAATGAGTCTGTTGCTGAGGCTATGAGGTGCGCATCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTCATTTGCTTAGGGCGAAAACCAAGTCAAGATTGATAGACCCGCCGGCAGAGCCAGACCGGCTCTCTGGCCTTATTCCTAAATCAGGACAACTACGATCTGGGTTTCTCGGCAAGATTGACGACGACGATGACGATCCCTTTCTGGAGGAGGACCTTCCAGACGAATTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTTTAATCACCGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTGGATATATGGAAATGGGAGGTAATGATTTTGATTCTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATCGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCGCTTGGCATTTGTTGTTCAATAGGCGGGTTGAGAAACAAACCAACACTAGTATACTCAATTATGTGAGGAGAGTTTTAGTGTGTCTCTTGATAAGCACATTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAACCAATATGTCATTGAGACGCTCTCAGGGCCACCCCTTATTGAAATACGGAAGAATGAGGAAGAAGATGAGAGGATTGCAGATGAAGTCCAAAAATTACAGAATGCTGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTGTAAAGAGTGGAAGGGTAATAGGTAGTGGACGGACTCACAAAAGTTTTTGTGCAAAAAGTACAAAATTTTCTCGAGCACTTACCAAAAATGGGAACGATGGAATAACGATTGACCACTTGCACAAACTAAGTCCGAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACCGGGGCCATATCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAGAAGATTTTTCAGAACGTGGCTCGGCGTGGATATAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGATGAGGTTTTCAAAACGATGAGTCTCTTTGAAGGAGCAACTGAAAACCGGAGGATAAGCAAATCTGCTTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTTCTAGGAATTGCCTCCAGCAAATTTTTCGTCTTCATTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAACGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATATGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCTACAACTTCTACCGTAGTCCTGAAATGGGCGAATCGGTTGAATTCTCTGTCCATATAGCTACTCCAGCTGAGAAAATTACAGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTTCCCCTATGATTGTGTTCAAGGATATCGATGGTTTAAATATGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCACCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCATCTTGGTCGAAGAAGTCGTTAAAATCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATATCAATATCCGTTCACTGTCTTCTTCTGCACCCTTCATTGGCTTTCCATCTAATTGGACTTCCTCTGCAAGTTGA 2859 42.71 MDTLKNSFKGNVSFKHTRKISAGVAGSEINHEELPILLNREPTGHRRRLRDRHPVNDSDPSDRTEVILKIDDGGSSAVSRHQDPAGNNGGKVWRESRCDFWNNDAIGIGESASRVSGVDRNEGFEFVQPGYGMEDPPTKLIGEFLHKQKIGGETTLDMDLEMEELRPDRIIPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSRDFQEEYKGGQPPRQQSHHERLGSPTISGVQNESVAEAMRCASNLSFHSELSFQRKSHLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDEFKRGNFNALTVLQWVSLILITAALVCTLSIPYLREKSLWELDIWKWEVMILILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNRRVEKQTNTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIRKNEEEDERIADEVQKLQNAGINIPPDLKAATFASVKSGRVIGSGRTHKSFCAKSTKFSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPYLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMREDEVFKTMSLFEGATENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFVFISSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGTQMIVEEMNILTTVFLRYDNLKIIIPNSVLATKLIYNFYRSPEMGESVEFSVHIATPAEKITAMKQRIISYIEGNKEHWCPSPMIVFKDIDGLNMLKLAVWLSHRMNHQDSGERWARRSILVEEVVKICQELDIQYRLLPIDINIRSLSSSAPFIGFPSNWTSSAS 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3674291 3678188 + ClG42_02g0040900.10 Clacu02g0409 242477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0409 952 PIRSF Memb_At2g17000 52 952 IPR016688 -
Clacu02g0409 952 MobiDBLite consensus disorder prediction 200 226 - -
Clacu02g0409 952 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 50 936 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Clacu02g0409 952 MobiDBLite consensus disorder prediction 173 239 - -
Clacu02g0409 952 SUPERFAMILY Sm-like ribonucleoproteins 765 824 IPR010920 -
Clacu02g0409 952 Gene3D - 775 824 IPR023408 -
Clacu02g0409 952 Coils Coil 506 526 - -
Clacu02g0409 952 MobiDBLite consensus disorder prediction 176 199 - -
Clacu02g0409 952 FunFam Predicted mechanosensitive ion channel 775 824 - -
Clacu02g0409 952 Pfam Mechanosensitive ion channel, beta-domain 768 824 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0409 K22048 - - csv:101207426 1675.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0409 Clacu-Chr2:3674291 Clacu03g1565 Clacu-Chr3:29248196 5.60E-150 dispersed
Clacu02g0409 Clacu-Chr2:3674291 Clacu02g1153 Clacu-Chr2:22856160 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0164 . 208 601 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.4e-153 537.7
Clacu08g1323 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Clacu10g0760 . 166 784 Mechanosensitive Ion Channel Family AT5G10490 58.0 4.1e-187 651.7
Clacu08g1323 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.8e-199 692.2
Clacu10g0760 . 166 561 Mechanosensitive Ion Channel Family AT1G58200 71.2 1.1e-163 573.9
Clacu02g1153 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.1e-259 891.7
Clacu02g0409 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Clacu02g1153 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Clacu02g1153 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Clacu02g0409 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.9 4.9e-270 927.5
Clacu02g1153 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.1e-237 818.1
Clacu02g0409 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Clacu02g1153 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.1e-163 572.0
Clacu05g1722 . 62 719 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.9e-202 702.2
Clacu03g1565 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.6e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67