Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0417 ATGGGTGCGGAACAAAACAATCACGATGCAGAGGAGGGAACGCTGGAGATTGGAATGGAATATAGAACAGTCTCTGGAGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGAACAACCAGGCGTGGTCAAGTCCTGGAAGTTGATGGGGAGAAAGCTGTTGTTCAGGTTTTCGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCGGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGCCCTCCTATCTTGCCTGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAAAGAACTTATCCTGAAGAGATGATACAGACTGGAATTTCTACCATTGATGTCATGAATTCCATTGCTAGAGGGCAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAGGCTGGCTTGGTTAAGAGGTTGGAGAAATCCAATGACCTTCTTGAGGGTGGTGAGGAGGACAACTTTGCCATTGTTTTTGCTGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTCAAACGTGATTTTGAAGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATCATCACTCCTCGCATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTACGTGAGGTGTCTGCTGCACGAGAGGAAGTACCTGGAAGGCGTGGATACCCTGGTTATATGTATACGGATCTTGCTACAATCTACGAACGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACCATGCCAAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACCGAGGGACAAATCTACATCGACAGGCAACTCTACAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGAATGACCCGCAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCCATGAAAGCCGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCAGTCAAGGAGCTTATGATACTCGAAACATTTTCCAATCACTTGACCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTGCACCGTATTCCTGCAAAGACTCTTGATCTGTTTTACAGCCGTGAATCTGCAAATTGA 1467 44.17 MGAEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN 488
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 3755720 3760284 - ClG42_02g0041700.10 Clacu02g0417 242485

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0417 488 Pfam C-terminal domain of V and A type ATP synthase 383 481 - -
Clacu02g0417 488 FunFam V-type proton ATPase subunit B, brain 29 488 - -
Clacu02g0417 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524(InterPro)
Clacu02g0417 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Clacu02g0417 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Clacu02g0417 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Clacu02g0417 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 16 486 IPR022879 GO:0007035(PANTHER)|GO:0046961(PANTHER)
Clacu02g0417 488 NCBIfam V-type ATPase subunit B 20 487 IPR005723 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu02g0417 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Clacu02g0417 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524(InterPro)
Clacu02g0417 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Clacu02g0417 488 Gene3D - 29 488 - -
Clacu02g0417 488 CDD V_A-ATPase_B 92 385 - -
Clacu02g0417 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0417 K02147 - - csv:101211838 960.288
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g198 . . . . . Bpe12g00130 . . Cmo19g00765 Cmo11g01753 . . . . Sed05g2251 Cpe04g00605 Cpe15g00607 Bhi05g01684 Tan02g0657 Cmetu10g1323 . . . . Cla02g00408 Cam02g0414 Cec02g0413 Cco02g0431 Clacu02g0417 Cmu02g0413 Cre02g0748 Cone12ag1245 . . . . Csa07g00121 . Cme01g01238 Blo04g00583 Blo13g00496 Bda15g01024 Bda14g00625 Bpe15g00802 . Bma03g00617 Bma08g00610 . . . Cma11g01365 Cma19g00752 . Car19g00587 . . . . . . . . . . . . . . . . Lsi11g01217 . Chy01g00662 .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu09g0169 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu05g1557 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 8.7e-76 280.4
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28710 95.0 2.4e-194 674.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003683 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 3 1 1 4 2 2 46