Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0417 ATGGGTGCGGAACAAAACAATCACGATGCAGAGGAGGGAACGCTGGAGATTGGAATGGAATATAGAACAGTCTCTGGAGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGAACAACCAGGCGTGGTCAAGTCCTGGAAGTTGATGGGGAGAAAGCTGTTGTTCAGGTTTTCGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCGGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGCCCTCCTATCTTGCCTGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAAAGAACTTATCCTGAAGAGATGATACAGACTGGAATTTCTACCATTGATGTCATGAATTCCATTGCTAGAGGGCAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAGGCTGGCTTGGTTAAGAGGTTGGAGAAATCCAATGACCTTCTTGAGGGTGGTGAGGAGGACAACTTTGCCATTGTTTTTGCTGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTCAAACGTGATTTTGAAGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATCATCACTCCTCGCATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTACGTGAGGTGTCTGCTGCACGAGAGGAAGTACCTGGAAGGCGTGGATACCCTGGTTATATGTATACGGATCTTGCTACAATCTACGAACGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACCATGCCAAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACCGAGGGACAAATCTACATCGACAGGCAACTCTACAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGAATGACCCGCAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCCATGAAAGCCGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCAGTCAAGGAGCTTATGATACTCGAAACATTTTCCAATCACTTGACCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTGCACCGTATTCCTGCAAAGACTCTTGATCTGTTTTACAGCCGTGAATCTGCAAATTGA 1467 44.17 MGAEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3755720 3760284 - ClG42_02g0041700.10 Clacu02g0417 242485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0417 488 Pfam C-terminal domain of V and A type ATP synthase 383 481 - -
Clacu02g0417 488 FunFam V-type proton ATPase subunit B, brain 29 488 - -
Clacu02g0417 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524(InterPro)
Clacu02g0417 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Clacu02g0417 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Clacu02g0417 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Clacu02g0417 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 16 486 IPR022879 GO:0007035(PANTHER)|GO:0046961(PANTHER)
Clacu02g0417 488 NCBIfam V-type ATPase subunit B 20 487 IPR005723 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu02g0417 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Clacu02g0417 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524(InterPro)
Clacu02g0417 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Clacu02g0417 488 Gene3D - 29 488 - -
Clacu02g0417 488 CDD V_A-ATPase_B 92 385 - -
Clacu02g0417 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0417 K02147 - csv:101211838 960.288