Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0419 ATGTTATCGGAGTTGATGAACTTTTTGAGGGCCTGTTTCCAGCCGAGCTCCGATCGGTATGTGGCCGGGGAAATCAGGGGGCAGCAGGATGGGCTGTTATGGTACAAAGATAGTGGACAACACTTGAATGGAGAGTTTTCAATGTCTGTGATTCAGGCCAACAATTTGCTTGAAGATCAGAGCCAGATTGAGTCTGGCAGTTTGAGCTTACACGAGTCTGGCCCCAAAGGAACATTTGTTGGTGTGTATGATGGCCATGGAGGCCCTGAGACTTCTCGGTATATCTGTGATCATCTATTCCAGCATCTCAAGAGATTTACTTCTGAGCAAGATCTAATGTCTGCGGATGTAATACGCAAGGCGTTCCAAGCGACAGAAGAGGGGTTTTTTTCAATAGTTCGAAGTCAATGGTCAACAAATCCTCAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATCTGTGATGGGACTCTCTATGTTGCAAATCTAGGTGATTCTCGTGCTGTTTTGGGTAGAGTAGTGAAGGCAACTGGCGAGGTTCTAGCCATTCAGTTGTCAACAGAACACAATGTTTCTAACGAGTCAGTGAGGCAAGAGCTGCAGTCTTTGCACCCTGATGACTCACAAGTTGTGGTTTTAAGGCATAATGTTTGGCGAGTAAAGGGCATAATACAGATTTCCAGATCCATAGGCGATGTGTACTTGAAAAAAGCTGAGTTCAATAAAGAACCATTGTATGCAAAGTTTCGAGTTCAAAAACCCTTCAAAAAGCCATTTTTGAGCTCTGAACCAGCCATTTCTGAGATCCAGTTGAAGCCAGATGATCAATTTGTTATATTTGCATCAGATGGGTTGTGGGAGCACCTTAGCAATCAGGAAGCAGTCGATATAGTTCATAGCCACTCTCAAAATGGAAGTGCAAGAAGACTGGTCAGAGCTGCTCTTCAAGTAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGATTTGAAGAAGATTGGCCGTGGCGTTCGTCGCCATTTCCACGACGACATCACTGTGGTGGTTGTGTTTCTTGATACCAATATGCTCTTCAGAGCCAGCTCCACGAAGAGCTTGAGTGTCTCACTACGAGGCGGTGGAGTCAACCGGCTTCCTAACTCTTTATCCCCCGTCACTACGCCCGTGTAG 1173 45.44 MLSELMNFLRACFQPSSDRYVAGEIRGQQDGLLWYKDSGQHLNGEFSMSVIQANNLLEDQSQIESGSLSLHESGPKGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDLMSADVIRKAFQATEEGFFSIVRSQWSTNPQIAAVGSCCLVGVICDGTLYVANLGDSRAVLGRVVKATGEVLAIQLSTEHNVSNESVRQELQSLHPDDSQVVVLRHNVWRVKGIIQISRSIGDVYLKKAEFNKEPLYAKFRVQKPFKKPFLSSEPAISEIQLKPDDQFVIFASDGLWEHLSNQEAVDIVHSHSQNGSARRLVRAALQVAAKKREMRYSDLKKIGRGVRRHFHDDITVVVVFLDTNMLFRASSTKSLSVSLRGGGVNRLPNSLSPVTTPV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3772477 3775742 - ClG42_02g0041900.10 Clacu02g0419 242487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0419 390 FunFam Phosphatase 2C family protein 34 363 - -
Clacu02g0419 390 Gene3D - 25 361 IPR036457 -
Clacu02g0419 390 ProSiteProfiles PPM-type phosphatase domain profile. 42 353 IPR001932 -
Clacu02g0419 390 SMART PP2C_4 37 351 IPR001932 -
Clacu02g0419 390 SUPERFAMILY PP2C-like 49 354 IPR036457 -
Clacu02g0419 390 PANTHER PROTEIN PHOSPHATASE 37 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu02g0419 390 CDD PP2Cc 46 353 IPR001932 -
Clacu02g0419 390 Pfam Protein phosphatase 2C 70 321 IPR001932 -
Clacu02g0419 390 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2125 Clacu-Chr1:32897366 Clacu02g0419 Clacu-Chr2:3772477 1.60E-162 dispersed
Clacu02g0419 Clacu-Chr2:3772477 Clacu10g0045 Clacu-Chr10:851231 1.10E-160 dispersed
Clacu02g0419 Clacu-Chr2:3772477 Clacu02g1241 Clacu-Chr2:24995670 1.40E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0419 - - - 0.0