Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0423 ATGGATTTTGACGAGTATGAATATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAAGTGAAGGAAACTGCCAATGGCGGTGATGCAGATATGAAGTCTGGAGATAAACATCGTAGTCGAAGTTCAAAGTATAAGAGTGACAGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAATCAGAAGATGAGTCACGTGATCAAGTTCGACATAGGGATAGGACTTCTTCCCGGCATCGTTCTAGGTCCAGAGAGAGAGACCGTGATAGGCATAGAAGCAGTAAGGAAAACAGGGGAAAGGAGGACAGAGAAGGGAATCAGGAAGAGAGAAGCAGTAAGGACAGGGATGACAGAGATAAAGAACGTTCTCATGATCGTGATAGACGGGGTGGAGATGGCGAGAGGAATAGGGAAAGAGAACAGTCACGTCGAAGTAGAAGTCGGTCAGAAAGACATCGCAGTGATCGGGATGAAGGCATAAGAGAGAGGAGCCGAGACAATGAACTCAGAGAAAGAGAAAAGGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGACGATATAAAGAGAAAAAGGAAGAAGCAGCTGAACCAGAGGCTGATCCTGAGAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTAAAGGCAACTGAAAGAGATGTGTATGAATTTTTCTCCAGGGCTGGTAAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCTGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTTCTGCTGCTGGTGGACCGGGTGGAGTAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATACGTTGGCAATCTGCACCCCAACATAACTGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCACTGTAGAACTGGTTCAGATGCCCCTTGATGAATCTGGCCATTGCAAGGGTTTTGGTTTTATTCAGTTCTCACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACGATAAAGGTATCCACAGTCACAGATCAGCCTGGTTTGCAAGATATTGGAGCAAGTACAGGAGACCTTGATGATGAAGATGGCGGTGGCTTGTCCTTAAACGCTAGTTCTCGAGCATCCCTGATGCAGAAGCTGGACCGGACTGGCGCCGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAGCCTAGGCGCTACTATGCCAATGGCGCCGATCCTTGGAGGTGCAACTATCCCATCCCTCGCTGTTGGTAATTCTTTGGCCTCCCTTCCCGGTTTTCCCGGACTTGGTGCAGGCATTCAGGTTCCCACCGTTGCTGCCAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGTCGGAACCAACTTTCGATCTGGATATCAGAGATGACGTTGAAGAGGAATGCTCTAGGTTCGGGAAATTGAAACATATATATGTTGACAAGAATAGCGCCGGTTTTGTATATTTGAGATTTGAAAAACCAGAGTCTGCAATGGAAGCCCAACGTGCTCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGTGCAACTTTCATGGACATCCCGAGCTACGAAGCGAAATTTCCAGACAGCAGATAG 1782 46.24 MDFDEYEYLEKTVENPEGQKVKETANGGDADMKSGDKHRSRSSKYKSDSKDDGEHRSKRSKSEDESRDQVRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNQEERSSKDRDDRDKERSHDRDRRGGDGERNREREQSRRSRSRSERHRSDRDEGIRERSRDNELREREKERESRERGRDGRRYKEKKEEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGVMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDIGASTGDLDDEDGGGLSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNSLGATMPMAPILGGATIPSLAVGNSLASLPGFPGLGAGIQVPTVAANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFEKPESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3811410 3823467 + ClG42_02g0042300.10 Clacu02g0423 242491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0423 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 582 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 FunFam CC1-like, splicing factor 306 414 - -
Clacu02g0423 593 FunFam HIV Tat-specific factor 1 homolog 498 581 - -
Clacu02g0423 593 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 402 516 IPR029123 -
Clacu02g0423 593 CDD RRM3_RBM39_like 498 581 - -
Clacu02g0423 593 Gene3D - 294 391 IPR012677 -
Clacu02g0423 593 MobiDBLite consensus disorder prediction 1 206 - -
Clacu02g0423 593 SUPERFAMILY RNA-binding domain, RBD 311 579 IPR035979 GO:0003676(InterPro)
Clacu02g0423 593 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 592 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)|GO:1990446(PANTHER)
Clacu02g0423 593 NCBIfam splicing factor, CC1-like family 83 591 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)
Clacu02g0423 593 Pfam RNA recognition motif 217 276 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 Pfam RNA recognition motif 523 574 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 Pfam RNA recognition motif 313 382 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 SMART rrm2_1 500 578 IPR003954 GO:0003676(InterPro)
Clacu02g0423 593 SMART rrm2_1 312 384 IPR003954 GO:0003676(InterPro)
Clacu02g0423 593 SMART rrm1_1 312 384 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 SMART rrm1_1 500 578 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 SMART rrm1_1 209 281 IPR000504 GO:0003723(InterPro)
Clacu02g0423 593 Gene3D - 201 293 IPR012677 -
Clacu02g0423 593 SUPERFAMILY RNA-binding domain, RBD 201 309 IPR035979 GO:0003676(InterPro)
Clacu02g0423 593 Gene3D - 495 593 IPR012677 -
Clacu02g0423 593 CDD RRM1_RBM39_like 209 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0423 K13091 - - csv:101209872 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1641 Clacu-Chr1:28533250 Clacu02g0423 Clacu-Chr2:3811410 7.90E-134 dispersed
Clacu01g2590 Clacu-Chr1:36176065 Clacu02g0423 Clacu-Chr2:3811410 2.40E-06 dispersed
Clacu02g0423 Clacu-Chr2:3811410 Clacu03g0473 Clacu-Chr3:5076276 3.30E-15 dispersed
Clacu02g0423 Clacu-Chr2:3811410 Clacu05g2156 Clacu-Chr5:30241178 2.80E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65