Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0430 ATGTCGAAAGAAGTGACGGAAGAGGGACAGTCCGGTCTGAGAAAGGACTACGTCGACCCCCCGCCGGCGCCGCTCATCGACGCCGCCGAACTCACTCTCTGGTCCTTCTACAGAGCCCTAATCGCTGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAAACCAAAATGTGCGACGGCGTCGGAATCCTCGGAATCGCCTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCTGGAATCTCCGGTGGTCATATTAATCCGGCGGTGACATTCGGGCTGTTTCTCGCGAGGAAAGTGTCACTGATTAGAGCGGTGGGGTACATGGTGGCGCAGTGCGCCGGAGCCGTCGTCGGCGTTGGGTTGGTTAAGGCTTTTATGAAGCATGATTATAACAACAACGGCGGCGGAGCCAACGCCGTTAATTCTGGTTACAGTAGGGGAACAGCTCTTGGTGCTGAGATTATTGGAACTTTTGTTCTTGTTTACACTGTCTTCTCTGCTACTGATCCCAAGAGAAGCGCGCGTGATTCTCACATCCCTGTTTTGGCTCCATTGCCGATTGGCTTCGCCGTGTTCATGGTTCATTTGGCAACCATTCCCATCACCGGAACCGGAATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTCATCTACAACCATGAAAAACCCTGGAACGACCACTGGATCTTTTGGGTCGGTCCGTTCGTCGGAGCTTTAGCGGCAGCGGCGTACCACCAGTACATTCTCCGGGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCCACAAACTGA 843 55.04 MSKEVTEEGQSGLRKDYVDPPPAPLIDAAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAVVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNHEKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3878375 3880096 - ClG42_02g0043000.10 Clacu02g0430 242498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0430 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Clacu02g0430 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Clacu02g0430 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Clacu02g0430 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Clacu02g0430 280 Pfam Major intrinsic protein 31 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g0430 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0430 Clacu-Chr2:3878375 Clacu05g2291 Clacu-Chr5:31293989 1.90E-122 dispersed
Clacu02g0430 Clacu-Chr2:3878375 Clacu02g1235 Clacu-Chr2:24916977 9.80E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0430 K09872 - csv:101209627 540.036