Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0438 ATGGAGATTCCAAGCAGTTGTTCAATGGATAGTTTCTTTGATGAACTTCTCAAAGACACTCATACTTGTACTCATACACATACTTGCAATCCACCAGGCCCTGACTACTCTCATACCCACACATGTTTTCATGTCCACACTAAAATTGTCCCTGCCCCATCTGAAGAAGACAAGGTTGTTACTGATGACACTGCAGAATCAACTGAGAAGAAGTCGAAGAAACGCCCGTTGGGTAACCGTGAAGCTGTTCGTAAGTACCGCGAGAAAAAGAAAGCTAGGGCAGCCTCATTAGAGGATGAGGTTGTTAGATTGAGGGCATTGAATCAGCATTTGATGAAGAGATTGCAGGGGCAGGCAGCACTCGAGGCTGAGATTGCTAGGCTCAAGTGTTTGCTTGTGGATATTAGGGGCAGAATCGAAGGGGAGATTGGTTCTTTCCCTTACCAAAAAGCTGTTAATCCTAACTTGTCCAACCCAAGCATCCCTGGTGCTTTTGTGATGAACCCATGTAATATGCAGTGTGAGGATCAGGTTTACTGCCTCCATCCCGGGGTCGATGGCAACAGAAGCAGTGAAGGTGCTGTGATAAATGGACAAAGCTTTGGTGCTTGTGAATTTGAAAATCCTCAATGTTTGGCAAATCATGATTCGGGATCAAAAGAACTACCTGGGTGTGGAGTAGGGAATGCAGTTTCAAATGATATTTCTTCAGGCAAGAAGAAAGGAGGAAGTCGTAAAGAGACATGGGCCTGA 753 45.02 MEIPSSCSMDSFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKIVPAPSEEDKVVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKAVNPNLSNPSIPGAFVMNPCNMQCEDQVYCLHPGVDGNRSSEGAVINGQSFGACEFENPQCLANHDSGSKELPGCGVGNAVSNDISSGKKKGGSRKETWA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3957605 3959608 - ClG42_02g0043800.10 Clacu02g0438 242506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0438 250 SMART brlzneu 67 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0438 250 Pfam Basic region leucine zipper 68 124 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0438 250 Gene3D - 57 135 - -
Clacu02g0438 250 Coils Coil 80 114 - -
Clacu02g0438 250 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 69 116 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0438 250 PANTHER CCAAT/ENHANCER BINDING PROTEIN 2 172 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Clacu02g0438 250 MobiDBLite consensus disorder prediction 55 79 - -
Clacu02g0438 250 CDD bZIP 73 126 - -
Clacu02g0438 250 MobiDBLite consensus disorder prediction 231 250 - -
Clacu02g0438 250 SUPERFAMILY Leucine zipper domain 71 117 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0438 Clacu-Chr2:3957605 Clacu02g1228 Clacu-Chr2:24824948 4.70E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47193 PF07716 bZIP_2 7.60E-14 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0438 K25785 - csv:101208161 469.544