Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0443 ATGAGCTTTGAAGGTCGCGTTATCAAATTGGGGGAGCAGATTTTTGCTAACTTCGAGCCTCCTCCCATGGCGTTATCCGTCGTAGACACAGAGTACCTCAAAGAGATCGACAAGGCTCGCCGTGACCTCCGCGCTCTCATTGCCAATCGGAACTGCGCTCCCATCATGCTTCGTTTAGCTTGGCATGACGCTGGCACATACGATGTGACTACAAAAACTGGTGGGCCTAATGGATCGATTAGGAACGAGGAGGAGTTTTCTCATGGTTCTAATAATGGACTGAAAAAAGCTATTGATTTTTGTGAGGAAGTGAAGTCTAAACATCCGAAGATTACTTATGCAGACCTGTACCAGCTAGCTGGCGTTGTTGCTGTTGAGGTCACTGGAGGCCCCACCATTGACTTTGTTCCCGGTAGAAAGGATTCAAACATTTGTCCCAGGGAAGGCCGACTTCCTGATGCCAAAAAAGGTGCACCACATCTGCGTGACATCTTTTATAGGATGGGCCTGTCTGACAAGGATATTGTTGCATTGTCTGGGGGTCACACTTTGGGAAGAGCACATCCAGAGAGATCTGGTTTTGATGGACCTTGGACAGAGGACCCTCTGAAATTTGATAACTCATACTTTGTGGAACTGTTGAAAGGAGAATCAGAGGGACTATTAAAACTTCCTACGGACAAGGCTTTACTTGAAGATCCTGAGTTCCGCAAATATGTGGAATTGTATGCAAAAAATGAAGATGCATTCTTCAAAGATTATGCTGAATCACACAAGAAACTTTCAGAGCTAGGGTTCACTCCAGGTTCTGGCAGGGCAATTGTGAAGGACAGCACTGTATTGGCACAGGGTGCCGTTGGAGTTGCGGTTGCAGCTGCTGTGATCATCACCTCATATCTGATGATTTAG 909 46.42 MSFEGRVIKLGEQIFANFEPPPMALSVVDTEYLKEIDKARRDLRALIANRNCAPIMLRLAWHDAGTYDVTTKTGGPNGSIRNEEEFSHGSNNGLKKAIDFCEEVKSKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRKYVELYAKNEDAFFKDYAESHKKLSELGFTPGSGRAIVKDSTVLAQGAVGVAVAAAVIITSYLMI 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3995253 3999742 + ClG42_02g0044300.10 Clacu02g0443 242511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0443 302 Gene3D - 39 265 - -
Clacu02g0443 302 ProSitePatterns Peroxidases proximal heme-ligand signature. 174 184 IPR019793 -
Clacu02g0443 302 CDD ascorbate_peroxidase 31 268 - -
Clacu02g0443 302 Gene3D Peroxidase, domain 2 152 258 - -
Clacu02g0443 302 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601(InterPro)
Clacu02g0443 302 Pfam Peroxidase 40 246 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 71 81 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 168 189 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 110 128 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 129 141 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 32 52 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 242 266 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 53 68 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 190 214 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 150 167 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Plant ascorbate peroxidase signature 85 109 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 SUPERFAMILY Heme-dependent peroxidases 38 270 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Haem peroxidase superfamily signature 174 189 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PRINTS Haem peroxidase superfamily signature 198 213 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 25 266 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Clacu02g0443 302 FunFam Cytosolic ascorbate peroxidase 39 156 - -
Clacu02g0443 302 ProSiteProfiles Plant heme peroxidase family profile. 53 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0443 302 FunFam L-ascorbate peroxidase, cytosolic 152 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0443 K00434 - - csv:101206941 540.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0443 Clacu-Chr2:3995253 Clacu03g0207 Clacu-Chr3:2290928 1.70E-92 dispersed
Clacu02g0443 Clacu-Chr2:3995253 Clacu01g2109 Clacu-Chr1:32781139 1.60E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g153 . . . . . . . . Cmo19g00743 . . Cma20g00755 . Car20g00656 Sed05g2221 . Cpe15g00588 Bhi05g01723 Tan02g0693 Cmetu01g1869 . Hepe02g0429 . . Cla02g00433 Cam02g0442 Cec02g0440 Cco02g0458 Clacu02g0443 Cmu02g0438 Cre02g0772 Cone12ag1230 Cone8ag1282 . . Lsi10g00492 Csa07g00094 Chy11g00259 Cme01g01268 Blo04g00565 . . Bda14g00614 Bpe15g00816 . Bma03g00606 . Sed01g0198 . Cmo20g00751 . Cma19g00735 . Car19g00564 Cpe16g00314 . Bhi10g01856 Tan05g1144 Cmetu11g0298 . Hepe08g0289 . . Cla02g01164 Cam02g1241 Cec02g1250 Cco02g1291 Clacu02g1223 Cmu02g1191 Cre02g1502 . Csa02g01388 . Cme11g00384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63