Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0463 ATGGGAATCCATTTGACAGGAATAGCAAATGCAAAGCAAAAGTTACAGAGAACTTTTTCGGCGAAATACGGGATTGGATCGGCGGTTACGAATGTTCCTAAAGGCCATTTTGCAGTGTACGTAGGAGAAACACAGAAGAAAAGGTTTGTAATTCCAATATGGTACCTGAATCATCCATTGTTTAAGGATTTGCTGAACCTTGCGGAAGAAGAATTTGGATTCGATCATCCAATGGGTGGCCTCACGATTCCTTGCAGCGAAGATTACTTCATCAGCTTAACTTCAGCTCTAAATTGTTCATAA 303 40.59 MGIHLTGIANAKQKLQRTFSAKYGIGSAVTNVPKGHFAVYVGETQKKRFVIPIWYLNHPLFKDLLNLAEEEFGFDHPMGGLTIPCSEDYFISLTSALNCS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4190972 4191274 - ClG42_02g0046300.10 Clacu02g0463 242531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0463 100 Pfam Auxin responsive protein 18 97 IPR003676 GO:0009733(InterPro)
Clacu02g0463 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 97 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0463 K14488 - - csv:101203821 201.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0463 Clacu-Chr2:4190972 Clacu02g0476 Clacu-Chr2:4241417 1.20E-31 dispersed
Clacu02g0462 Clacu-Chr2:4174265 Clacu02g0463 Clacu-Chr2:4190972 5.80E-22 tandem
Clacu02g0463 Clacu-Chr2:4190972 Clacu02g0464 Clacu-Chr2:4198055 8.30E-20 tandem
Clacu04g0160 Clacu-Chr4:4018846 Clacu02g0463 Clacu-Chr2:4190972 2.50E-09 transposed
Clacu11g0514 Clacu-Chr11:4815155 Clacu02g0463 Clacu-Chr2:4190972 1.30E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g82 . . . . . Bpe12g00105 . . . Cmo11g01714 Cma02g00343 Cma20g00778 . . . . . . . . . . . . Cla02g00454 Cam02g0461 Cec02g0461 . Clacu02g0463 Cmu02g0457 Cre02g0791 . . . . . . Chy11g00307 Cme01g01295 . Blo13g00528 . . . . . Bma08g00769 Sed01g0241 Cmo02g00335 Cmo20g00777 . . . . . . Bhi10g01906 Tan05g1205 Cmetu11g2080 . . . . . . . . . . . Lsi11g01171 Csa02g01344 Chy01g00707 Cme11g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213