Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0470 ATGTGGCTACAAAAAGGAAACAGTGTTAATAGCGTCAAAAAGGTAGCAGCAGCAGGCGGAGGGGGAAATGGGTTGGTTGCTATTGGTATAGACAGGGAAAAAGGAAGCCAAAATGCTCTCAGATGGGCCGCCGACCATTTGCTCGGAAAGGGTCAAACTGTGATTTTAATCCATGTTGTTCAGAGACCTTCCAGTGCGGCTGCTTGTTTGATTGGGGAAGCCATTGTTTGTAGTGGCGATGGTAATTTCACAGCTGATACCCCTCGTAAGCAGCAGCTCGAGATGCAGACTAGAGACATTTTTCTCACCTTCCATTGCTATTGTACTCGCAAGGATATTCAATGTCTTGATGTTATATTGGAAGACACCGATATAGTTAAAGCATTAATCGAATACGTATCGTACGCTGCAATCGATAACTTGGTGCTCGGGGCTCCTTCGAAACATGGATTTATTAGGTTTAAGACGTCGAGCATGGGCAGTAGTGTGTCAAAAGGAGCACCGGATTTCTGCAATGTATATGTCATCTCGAAGGGGAAGGTGTCATCAGTGAGAAATGCATCTCGCTCAACTCCCTTTACTTCCCCTCTACAAGACCATTTACGGAAGATTTCTAAGCCGATTGCAAAGGGAGCAATTACTCCTCGACATAAGTTTAATTTAAGAGACAGGACATCATTCAAGCCTCGCAGCTTTCAAGATGAATCAATCAAGTCACCTTTCTCTCATGGAGGAGAGAGAACTTCTATCTCAAAATGTAGTGGAGGATTCTCTGAGTCAGAATCTGACATATCCTTTGTCAGCTCTGGCAGACCAAGCACGGATCGTACTTCTTCTGTTGCATTTGACTACTCTGATTCGGCTCCCCCACGATTTTCAACCAGCTCAGAGCATAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCTCAGTAATCTCAATGATTTCTCATCAGTTTCAGATGAGAGCTGCAGGACATCATGTTCCTGGTCATCTCAGAACTTGGATGAAGCAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCAAAGCAAAAGGCGACGGAACTAAATAATTGGAGACGTGAAGAAGAACAAAAACTAGAAGAGGCACGACTTGCACAAGAGGCAGCAATGGCTATTGCAGAGCAGGAGCGAGTGAGATGCAGAGCGGCAATGGAAGCAGCTGATGCAGCTAAGAGAATTGCAGAGTTCGAATCACATAAAAGAGAAAATCTAGAGATTAAAGCACTTAAAGAAGCAGAGGAAATGCAGAGAGCATTGAAAAATCTTGCACAGAACAACATCAGATACAGGAGATATTCAATTGAGGAGGTTGAATCGGCGACGGAACATTTTGCACAATCTCGGAAGATTGGGGAAGGAGGTTATGGACCTGTCTTTCGTTGTCGTCTTGATCACACATCAGTTGCAGTCAAGGTTTTGCGTCCTGATGCATCTCAAGGAAGGACACAGTTTCAGCAAGAGATTGATATATTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCTGAATATGGCATTCTAGTGTATGAATACATGTCCAACGGAAGTTTGGAGGATCGACTCTTTCGAAAGGGGAACACTCCTGTTATTCCTTGGCAATTGAGGTTTCGAATTGCTGCCGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACAAAGCCAGAGCCATTGGTGCACCGTGACCTCAAGCCAGCTAACATATTGCTGGACCACAACTATGTTTGCAAGATAAGTGATGTTGGTTTGGCTAGACTTGTACCTGCTGTGGCCGAAAATGTAACACAATGCTACATGACTTCGGCTGCTGGAACTTTCTGCTATATAGACCCTGAGTATCAACAAACTGGAATGCTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATGTTGCTTCAACTAATTACAGCCAAGCCTCCCATGGGGTTGGCTCACCATGTTGCTCGCTCTATCGAGAAGGGGACTTTTCGGGAGCTTCTGGACCCAGCTGTGGTTGATTGGCCAGTGGAACAAGCACTTTGCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTAGGCGAAAAGACAGACCAGATCTCGGCAAGGTGGTGTTGCCAGAACTTAACAAATTGAGAGAATTTGGTGAAGACAAAATGGAGTTCATGGTGTCAAGGGATAGTAGTGGATCTTTGAGCGGTTTTAGCCATGCCTCAATGGAGCAGGACATAATGAGCGACCCACAACTAATGATGGCTTCAGAAAGTTCCAAGAGCCAATCTAGTGAATCATCACAGAAAGCCTTATCCAAAGGCTTCTATCATCAGTTTCTCAGAAGGTTGGATTTCCCACAACTCCATTCATCATCTATAAATACATATTTGATTGAGTTCAGAAACAACACAAGTCTTCATTCTTCTCAAGAGAAGTTGTCTTCTCATCTCAAGCTTCTTCGACGACCTTCCACCTCAACAAAGGAAGGAGTTGCAGTAGTTCCAAAGGGCTACTGTGCGGTCTATGTTGGAGAGATCCAAAAGAAGCGTTTTATCATCCCTGTAACGTACTTGAACCAACCATGTTTTCAAGACTTGCTTAGTCAATCTGAAGAAGAATTTGGTTATTATCATCCTATGGGTGGTCTTACCATTCAGTGCAGAGAAGATATCTTCACCAATCTCATTTCTCAGTTAAATAGGCCATGA 2775 43.82 MWLQKGNSVNSVKKVAAAGGGGNGLVAIGIDREKGSQNALRWAADHLLGKGQTVILIHVVQRPSSAAACLIGEAIVCSGDGNFTADTPRKQQLEMQTRDIFLTFHCYCTRKDIQCLDVILEDTDIVKALIEYVSYAAIDNLVLGAPSKHGFIRFKTSSMGSSVSKGAPDFCNVYVISKGKVSSVRNASRSTPFTSPLQDHLRKISKPIAKGAITPRHKFNLRDRTSFKPRSFQDESIKSPFSHGGERTSISKCSGGFSESESDISFVSSGRPSTDRTSSVAFDYSDSAPPRFSTSSEHSFASLPFKPKWTDLSNLNDFSSVSDESCRTSCSWSSQNLDEAELEMRRLKLELKQTMEMYSTACKEALTAKQKATELNNWRREEEQKLEEARLAQEAAMAIAEQERVRCRAAMEAADAAKRIAEFESHKRENLEIKALKEAEEMQRALKNLAQNNIRYRRYSIEEVESATEHFAQSRKIGEGGYGPVFRCRLDHTSVAVKVLRPDASQGRTQFQQEIDILSCIRHPNMVLLLGACPEYGILVYEYMSNGSLEDRLFRKGNTPVIPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVCKISDVGLARLVPAVAENVTQCYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHHVARSIEKGTFRELLDPAVVDWPVEQALCFAKLALQCAELRRKDRPDLGKVVLPELNKLREFGEDKMEFMVSRDSSGSLSGFSHASMEQDIMSDPQLMMASESSKSQSSESSQKALSKGFYHQFLRRLDFPQLHSSSINTYLIEFRNNTSLHSSQEKLSSHLKLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISQLNRP 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4215971 4223458 + ClG42_02g0047000.10 Clacu02g0470 242538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0470 924 Gene3D Transferase(Phosphotransferase) domain 1 544 753 - -
Clacu02g0470 924 MobiDBLite consensus disorder prediction 234 258 - -
Clacu02g0470 924 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 443 543 - -
Clacu02g0470 924 FunFam U-box domain-containing protein 51 544 743 - -
Clacu02g0470 924 Coils Coil 368 403 - -
Clacu02g0470 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0470 924 PANTHER OS02G0152300 PROTEIN 26 787 IPR051348 -
Clacu02g0470 924 Pfam Protein kinase domain 472 723 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0470 924 Gene3D Phosphorylase Kinase; domain 1 437 543 - -
Clacu02g0470 924 CDD STK_N 25 179 - -
Clacu02g0470 924 Pfam Universal stress protein family 27 168 IPR006016 -
Clacu02g0470 924 SMART serkin_6 471 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0470 924 SUPERFAMILY Protein kinase-like (PK-like) 453 729 IPR011009 -
Clacu02g0470 924 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 27 176 - -
Clacu02g0470 924 Coils Coil 337 357 - -
Clacu02g0470 924 Coils Coil 428 459 - -
Clacu02g0470 924 ProSiteProfiles Protein kinase domain profile. 471 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0470 924 Pfam Auxin responsive protein 837 919 IPR003676 GO:0009733(InterPro)
Clacu02g0470 924 Gene3D HUPs 25 176 IPR014729 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0465 Clacu-Chr2:4201058 Clacu02g0470 Clacu-Chr2:4215971 5.20E-29 dispersed
Clacu02g0468 Clacu-Chr2:4208378 Clacu02g0470 Clacu-Chr2:4215971 6.30E-29 dispersed
Clacu02g0470 Clacu-Chr2:4215971 Clacu05g2841 Clacu-Chr5:35647434 2.10E-242 dispersed
Clacu11g0520 Clacu-Chr11:4852563 Clacu02g0470 Clacu-Chr2:4215971 2.10E-25 dispersed
Clacu11g0521 Clacu-Chr11:4856590 Clacu02g0470 Clacu-Chr2:4215971 2.60E-26 dispersed
Clacu02g0469 Clacu-Chr2:4210478 Clacu02g0470 Clacu-Chr2:4215971 8.20E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73321 PF00069 Pkinase 3.50E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0470 - - - 0.0