Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0478 ATGGGTTTCCGCTTGCCTAGAATTGTTCATGCTAAGCAAAGTCTTCAGCGATCTTCATCAACAGGAAATGGAGCATCTCCAAAGGCTGTTGATGTTCCTAAGGGCTATTTTACCGTTTATGTCGGTGAGGAACAAAAGAAGCGTTTTATCATCCCACTATCTTACTTGAACCAACCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCGATGGGCGGCATCACAATTCCTTGTAGTGAAGAAATTTTCCTAAATCTCACGCAGAGTTTGAATGACTCATGA 303 40.26 MGFRLPRIVHAKQSLQRSSSTGNGASPKAVDVPKGYFTVYVGEEQKKRFIIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCSEEIFLNLTQSLNDS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4245983 4246285 + ClG42_02g0047800.10 Clacu02g0478 242546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0478 100 MobiDBLite consensus disorder prediction 1 29 - -
Clacu02g0478 100 Pfam Auxin responsive protein 16 96 IPR003676 GO:0009733(InterPro)
Clacu02g0478 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 96 IPR003676 GO:0009733(InterPro)
Clacu02g0478 100 MobiDBLite consensus disorder prediction 12 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0478 K14488 - - csv:116405158 190.274
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0472 Clacu-Chr2:4232578 Clacu02g0478 Clacu-Chr2:4245983 5.50E-45 dispersed
Clacu02g0473 Clacu-Chr2:4234547 Clacu02g0478 Clacu-Chr2:4245983 1.60E-47 dispersed
Clacu02g0478 Clacu-Chr2:4245983 Clacu11g0521 Clacu-Chr11:4856590 5.20E-30 dispersed
Clacu02g0476 Clacu-Chr2:4241417 Clacu02g0478 Clacu-Chr2:4245983 1.30E-49 proximal
Clacu02g0478 Clacu-Chr2:4245983 Clacu02g0479 Clacu-Chr2:4249565 8.30E-44 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g74 . . . . . . . . . Cmo11g01711 . Cma20g00781 . . Sed04g3883 . . Bhi05g01763 Tan02g0723 Cmetu01g1922 . . . . Cla02g00467 Cam02g0474 Cec02g0474 . Clacu02g0478 Cmu02g0473 Cre02g0804 . Cone8ag1253 . . . Csa07g00059 . Cme01g01304 . . . . . . Bma03g00585 . . . Cmo20g00785 Cma11g01409 Cma19g00711 . . . . . . . . . . . . . . . . . . . Csa02g01334 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213