Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0479 ATGGGTTTCCGCTTGCCTAGCATTGTTCATGCTAAGCAAAGTTTTCGGCGATCTTCGTCAACAGGAAATGGAGCATCTCCAAAGGCTATAGATGTTCCAAAGGACTACTTTGCAGTTTATGTTGGTGAGGCACAAAAGAAACGTTTTGTCATCCCACTATCTTGCTTGAACCAACCTTCATTTCAAGATTTATTGAGTCAAGCAGAAGAAGAATTTGGATATGATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGAAACTTTTCTCAGTCTCATGCAAAGCTGA 291 41.24 MGFRLPSIVHAKQSFRRSSSTGNGASPKAIDVPKDYFAVYVGEAQKKRFVIPLSCLNQPSFQDLLSQAEEEFGYDHPMGGITIPCSEETFLSLMQS 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4249565 4249855 + ClG42_02g0047900.10 Clacu02g0479 242547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0479 96 MobiDBLite consensus disorder prediction 1 29 - -
Clacu02g0479 96 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 94 IPR003676 GO:0009733(InterPro)
Clacu02g0479 96 Pfam Auxin responsive protein 13 95 IPR003676 GO:0009733(InterPro)
Clacu02g0479 96 MobiDBLite consensus disorder prediction 12 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0479 K14488 - - csv:105436056 164.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0476 Clacu-Chr2:4241417 Clacu02g0479 Clacu-Chr2:4249565 5.90E-42 dispersed
Clacu02g0479 Clacu-Chr2:4249565 Clacu11g0521 Clacu-Chr11:4856590 2.30E-27 dispersed
Clacu02g0479 Clacu-Chr2:4249565 Clacu02g0482 Clacu-Chr2:4295464 5.20E-11 proximal
Clacu02g0478 Clacu-Chr2:4245983 Clacu02g0479 Clacu-Chr2:4249565 8.30E-44 tandem
Clacu02g0479 Clacu-Chr2:4249565 Clacu02g0480 Clacu-Chr2:4254922 2.70E-23 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g72 . . . . . . . . Cmo19g00723 . . . . . Sed05g2259 . . Bhi05g01764 Tan02g0724 Cmetu01g0370 . . . . Cla02g00468 Cam02g0475 Cec02g0476 . Clacu02g0479 Cmu02g0474 Cre02g0805 . . . . . . . Cme01g01307 . . . Bda14g00593 . . Bma03g00584 . Sed05g3570 . Cmo20g00798 . . . . . . Bhi10g01912 Tan05g1211 Cmetu11g0537 . . . . . . . . . . . Lsi11g01161 . . Cme11g00434
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213