Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0480 ATGGGATTCCGTTTAAACAGCCCAAGGAAATCATCATCGACTGTACCAAAGGGGTTTTTCGCCGTCTACGTTGGAGAGACACAAAAGAGACGACATGTGATTCCGATTTCTTACTTGAAGCATCCATCGTTTCAAGATTTGTTGAGTAAAGCTGAAGAAGAGTTTGGATTCGATCATCCAATGGGGGGCTTAACGATCCCTTGCAATGAAGATGTGTTCTTCGAAGTCACTTCTCGCTTGGCTAATTGTTGA 252 43.25 MGFRLNSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANC 83
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4254922 4255173 + ClG42_02g0048000.10 Clacu02g0480 242548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0480 83 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 10 80 IPR003676 GO:0009733(InterPro)
Clacu02g0480 83 Pfam Auxin responsive protein 9 79 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0480 K14488 - - csv:105436052 167.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0480 Clacu-Chr2:4254922 Clacu11g0519 Clacu-Chr11:4839337 2.90E-26 dispersed
Clacu02g0479 Clacu-Chr2:4249565 Clacu02g0480 Clacu-Chr2:4254922 2.70E-23 tandem
Clacu02g0480 Clacu-Chr2:4254922 Clacu02g0481 Clacu-Chr2:4274902 4.60E-16 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g70 . . . . . . . . . . . Cma20g00786 . . Sed05g2270 . . Bhi05g01766 Tan02g0734 Cmetu01g0016 . . . . Cla02g00469 Cam02g0476 Cec02g0477 . Clacu02g0480 Cmu02g0475 Cre02g0807 . . . . Lsi10g00441 . . Cme01g01309 . Blo13g00529 . Bda14g00592 . . . . Sed01g0246 . Cmo20g00805 . . . . . Cpe05g01302 Bhi10g01918 Tan05g1219 Cmetu11g1650 . . . . . . . . . . . Lsi11g01159 Csa02g01325 . Cme11g00436
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213