Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0484 ATGAAAATCGGTGTACAAGTAGTCATCGTCATCGTCGTCGTGAACTCTTCCGCCGTCGTCGGAGGGAGGTGGCTAACTTTCCGGCGAGGACATTGTCGAGCTTCCGGCCGGCTTGGAGTGATGACTTCCGATGAGATTGTGAGGGTGATTGTTTATGTTAATGATTGGGAGTTTGGAACTCAATTGGGCAACAACTGCGAAATGGGTGATACTGAAGATGCTAACACTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGTATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCACCGCACTTTCAGTCAAATTTTCTTGCGGATAATAGTAGAAGAATTGGGATACCTCCTAGCCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAATTATAACCCGGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAATAGCTCTGGTGGATTGGAACGATCAATTAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCTGATGGGGACAGCGTGGACGACTTGTTTTCTGCTTATATGAATTTGGATAATATCGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCAAGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGCGCTCAAATGCCTGGATTGAATTCATCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGGGGAGATATTGCTCCAACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCTCCCAAAATGCCTCCCACACCACCTGGCGTTCGCCCGGGGCAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGTTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCGAAAGAGCGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCCGCTCAACTCACACTTCTACAGAGAGATTCCGTGGGCCTTACAAACCAGAATAATGAACTGAAGTTTCGACTACAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAACTCGCTACAACAGAGCTAAATGCGCAGTCTCATCCCTCCAACGGAGTAATGCCCCAATCTTCCATCAATCACCATGGCCTACAGCTTCAGCTTCAGCACCAGCAACAACAACAGATCCAGCAGAATGGGAATGCAACCACAAAACCAGAATCCAACCAATAA 1899 45.5 MKIGVQVVIVIVVVNSSAVVGGRWLTFRRGHCRASGRLGVMTSDEIVRVIVYVNDWEFGTQLGNNCEMGDTEDANTENMRNLQCSYGVSSSSAGNLPFSMDQLKISQMNCSQIRPPHFQSNFLADNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFNSSGGLERSISSKENAGLLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGQENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMPQSSINHHGLQLQLQHQQQQQIQQNGNATTKPESNQ 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4334410 4337437 - ClG42_02g0048400.10 Clacu02g0484 242552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0484 632 MobiDBLite consensus disorder prediction 334 410 - -
Clacu02g0484 632 FunFam probable transcription factor PosF21 488 541 - -
Clacu02g0484 632 MobiDBLite consensus disorder prediction 150 182 - -
Clacu02g0484 632 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 487 550 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0484 632 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 223 620 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu02g0484 632 SUPERFAMILY Leucine zipper domain 489 540 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0484 632 Coils Coil 568 588 - -
Clacu02g0484 632 Coils Coil 505 560 - -
Clacu02g0484 632 MobiDBLite consensus disorder prediction 356 387 - -
Clacu02g0484 632 SMART brlzneu 485 549 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0484 632 MobiDBLite consensus disorder prediction 423 449 - -
Clacu02g0484 632 Pfam bZIP transcription factor 489 543 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0484 632 MobiDBLite consensus disorder prediction 605 632 - -
Clacu02g0484 632 Gene3D - 488 540 - -
Clacu02g0484 632 MobiDBLite consensus disorder prediction 135 149 - -
Clacu02g0484 632 MobiDBLite consensus disorder prediction 295 317 - -
Clacu02g0484 632 MobiDBLite consensus disorder prediction 126 255 - -
Clacu02g0484 632 MobiDBLite consensus disorder prediction 286 317 - -
Clacu02g0484 632 CDD bZIP_plant_RF2 490 539 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0484 Clacu-Chr2:4334410 Clacu08g0841 Clacu-Chr8:18442680 5.80E-42 dispersed
Clacu02g0484 Clacu-Chr2:4334410 Clacu02g0485 Clacu-Chr2:4346630 6.60E-272 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47197 PF00170 bZIP_1 9.70E-09 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0484 - - - 0.0