Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0485 ATGGGTGATACTGAAGATGCTCGTACTGATAACCTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTGCACAGCATTTTCAGTCGAATTTTCTTGGAGATAATAGTAGAAGAATTGGGATACCTCCTTGTCCCAACTCACCGCAGATCCCACCAATCTCACCGTATTCCCAGATCCCGGTGTCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCATTTCGTGACTCCCCTTCTACATCGAATTCAGATCAGGTTTCTGCTGATACGTCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGAGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGTTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGTTCAGGTGGATTGGAGCGATCAACTAGTAGTAAAGAGAATGCGGGAATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAAGCATTGATAACAATCTGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGTAGCGGAACAAAAACAGGGGGTGAGAGCAGCGATAATGAAGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAGTGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCCATGGATAGTTTTATGGGCAAGTTACAGTTTGGTGATGAGTCACCGAAAATGCCTCCTACGCCGCCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCAACTCCATTCAGCTTGGAGTTCGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCGGAGATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATTTTGGCTAACCGTCAATCTGCTGCTCGATCAAAAGAACGGAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACGCTTCTGCAGCGAGACTCTGTTGGACTTACAAACCAGAATAATGAACTTAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGCTCTAAATGAAGCATTAACTGCGGAGGTTCAGAGATTGAAGCTCACTACAACCAATATAAACGCGCAATCTCATCCCTCAGACGGGGTAATGGCTCAATCTTCTATGAATCACCACGGACTCCAACTTCAGCTTCAGCAGCAGCAGCAACAACATCACCAACAACAACAGCAACAACATATGCAGCAGAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA 1719 44.85 MGDTEDARTDNLRNLQCSFGTSSSSALKHHFSMDQLKISQMNCSQGRAQHFQSNFLGDNSRRIGIPPCPNSPQIPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENAGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQVPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLTTTNINAQSHPSDGVMAQSSMNHHGLQLQLQQQQQQHHQQQQQQHMQQNGSATTKPESNQ 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4346630 4350434 - ClG42_02g0048500.10 Clacu02g0485 242553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0485 572 SMART brlzneu 417 481 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0485 572 Coils Coil 437 492 - -
Clacu02g0485 572 MobiDBLite consensus disorder prediction 57 249 - -
Clacu02g0485 572 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0485 572 MobiDBLite consensus disorder prediction 228 249 - -
Clacu02g0485 572 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0485 572 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0485 572 MobiDBLite consensus disorder prediction 290 320 - -
Clacu02g0485 572 MobiDBLite consensus disorder prediction 516 572 - -
Clacu02g0485 572 FunFam probable transcription factor PosF21 420 473 - -
Clacu02g0485 572 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 560 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu02g0485 572 MobiDBLite consensus disorder prediction 83 115 - -
Clacu02g0485 572 MobiDBLite consensus disorder prediction 268 342 - -
Clacu02g0485 572 Coils Coil 535 555 - -
Clacu02g0485 572 Gene3D - 420 472 - -
Clacu02g0485 572 MobiDBLite consensus disorder prediction 355 381 - -
Clacu02g0485 572 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0485 572 MobiDBLite consensus disorder prediction 181 216 - -
Clacu02g0485 572 MobiDBLite consensus disorder prediction 275 289 - -
Clacu02g0485 572 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0485 Clacu-Chr2:4346630 Clacu08g0841 Clacu-Chr8:18442680 2.20E-40 dispersed
Clacu02g0484 Clacu-Chr2:4334410 Clacu02g0485 Clacu-Chr2:4346630 6.60E-272 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47198 PF00170 bZIP_1 8.80E-09 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0485 - - - 0.0