Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0487 ATGGAGCTGGGAATTGTTTCGCTTCTCAGAGCTGCTTGGATTGCAGGAATATTGCCTATAATTGTAGCTTTCTTACCGTTCTCTACACTGAATTGGTTTCGTGGATTTCTGTTGGGGTTTGCGAATAGAGGGAAGACCTTGCAATCGTCTTCTAAGAAATTCACTGTACCTCAGAAATTCTTCTGTCACTTTTATGTGTTGGCTGTTATCTGGACAACCTTGTTGCTAGGAACAACTTGGATGTATGGATATGTATCAACCCCGGAAATCTCAGAGCCATTTAATTTTCCTGCCATTACCAGCCAGTTGACTGGAGGTTCAAGTTCGTTTTCATGGCAAAAATCTCATTCATCTCGGAGGGAACACAGATTCTTGGTCTGGAAATCTGTTTTTCTACTTTTATTAATGGAAGTTCAAGTTTTGAGACGTCTTTATGAAACAATATACGTTTTCAACTATAGTCCCTCGGCTCGGATGCATATCTTTGGATATTTAACTGGCTTGTTTTTCTATACAGCAACTCCTCTATCACTTTGTAGCAATTGTATTCCAGAAGTGTATCACTTTGTCGCAAGTGGGCTAGCTCAGTTTATTGTTCAAGGAAAAAGGCAAATGCCTGATGTTGAAGTTAACCTGTTGGATGCTGTCATTCCTCTATCAAATTTAGGGTGGTGTCAGTGGATTGGTGCAGCTTTATTCTTTTGGGGTTGGATTCATCAGCATCATTGCCATCAGATTCTGGGCTCACTGCGGGTACGTAGAGAACAATCTGAAGAATATAGAATTCCTCATGGTGATTGGTTCGAAATCGTGTCGTCTCCACATTATCTCGCCGAGATTGTTATATATGGTGGACTTGTAGTTGCTAGTGGAGGAGAAGACTTCACAATGTGGCTGCTTTTTGCATTTGTGGTGGTGAATCTGGCCTTTGCGGCAGCAGAAACACATAAATGGTTGCTTATTTGGAATTATCATAAGGTAATGATAATGATGTTGTATATAGAGTTTATGCACTGCACTGGAGTTCACAGCCCTCATATTTGGTAG 1047 40.78 MELGIVSLLRAAWIAGILPIIVAFLPFSTLNWFRGFLLGFANRGKTLQSSSKKFTVPQKFFCHFYVLAVIWTTLLLGTTWMYGYVSTPEISEPFNFPAITSQLTGGSSSFSWQKSHSSRREHRFLVWKSVFLLLLMEVQVLRRLYETIYVFNYSPSARMHIFGYLTGLFFYTATPLSLCSNCIPEVYHFVASGLAQFIVQGKRQMPDVEVNLLDAVIPLSNLGWCQWIGAALFFWGWIHQHHCHQILGSLRVRREQSEEYRIPHGDWFEIVSSPHYLAEIVIYGGLVVASGGEDFTMWLLFAFVVVNLAFAAAETHKWLLIWNYHKVMIMMLYIEFMHCTGVHSPHIW 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4377428 4380762 + ClG42_02g0048700.10 Clacu02g0487 242555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0487 348 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 229 313 - -
Clacu02g0487 348 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 224 320 IPR001104 GO:0006629(InterPro)|GO:0016627(InterPro)
Clacu02g0487 348 PANTHER DFG10 PROTEIN 1 318 IPR039698 GO:0003865(InterPro)|GO:0003865(PANTHER)|GO:0005783(PANTHER)|GO:0006488(PANTHER)|GO:0006488(InterPro)|GO:0016095(PANTHER)|GO:0019408(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0487 K12345 - - csv:101215230 580.096
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g54 . . . . . Bpe12g00097 . . . . . . . . Sed05g2282 Cpe04g00096 . Bhi05g01779 Tan02g0746 Cmetu01g1015 . Hepe02g0462 . . Cla02g00477 Cam02g0485 Cec02g0487 Cco02g0492 Clacu02g0487 Cmu02g0483 Cre02g0818 . . . . . Csa07g00047 . . . Blo13g00532 Bda15g01062 . . . . Bma08g00778 . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01146 . Chy01g00733 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007485 1 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 2 34