Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0501 ATGGAAGCCGAAGAAGATGATTCTTCGTATCATGACCCAAAATCTTCGTTGTATGTTGATGATGGAAACTTAGATGTTAAGTGTGACACCAATCGGGAGCTTCAGAGCAATGAAGAACAGCATTGTGTGTCCAAGTCCTCAATTATGGAAACGGAGTTTTCACCTAATACCGGCGTGGAATCTTTACCACCCAGAGATGCAATTCTTGGGGATGAAATTCTTGCTGTGGATACTTATTCAGAGATGGAGAAGAAGGATTTGGTGGAGGAGACAGAGATAGCAGGGGAGAAGGATTTTCGCAACATTATTGAGGATATGGCGGAAGATTCAGTGAAGTTGGAGAATGAACCTGATATTGCGGAGACGGGGTTATTGGGACAAAGGGTTTTCGCTGATGTGAAAAAGAATACAGGGGTGTCGGAGGAGGAGGGGGCTTTGAGTGAATTTGCAGAAGGTGAGTTGTTACCTGAAATGGTTTTGGTTGGGGACGCTGAAAATCAGGTTGAGGGCAACGTTTTAATGGCGAATTTTTCAGAGGATACGGTCGTTGAAGGTTCAGCTACAGTTGGCTGTGCAGAGACAAACGAGAAGACGTGCCTGATTGATGTTTTGGCTGAGGAAACGCTTGCAGAAACGACTCTTTTTGTGCAGGATGTAGATGTTACTGATGCAACCAATTTGGTGAAGAAGACGGAGGTGGAAGAGAATGCCGATGACCCCAATGATTCGAAGGATACAGAGGTGCCAAAGCAAGAAAATTTAGGTGTGGAGGAAAGGCAATTAGGTGTCCCGGTGCAGTTGGCAGAGAACTCTGAGTTGAAAGTTAGTTCGGTAGATGGGGCTGTGGTGGAGGAGGGACAGTCGACAAATTTAGCAGACAGAACTGGTGAAACGTTGAAGATGAATGTCTCAAGCACCATTGATGAGGTGGGGGTGACACATTTTGCTGGGGAGATTAATGAGGCGGTAAATATAGGAAACACTGAAGACAAGACTATTGAGATGGGCGGAATGTGTGTGTATGACAAGGCTACTGATGTTGCGATGATGGAGAATTTGGCAGATGAGACCCCAGAGATCAAGGGAGTGGAGTTAGCAGACTACACTATTGAAGAGTTGAAGATTGAGAACGTGGAAGATAGGGAAGCGGGAGTGCAAGGATTGGGTGTGGCTGATGAGAGTCCCGTGGTTGGGAAGCTTGAGAATATGGCAGATGAGACTGCAGAGGCTGAGGAAGTGCAAGGGACTGACTACACTGCAGAAGATGTACAATCGGAGAATGTAGAAGAAGACAAGACTGTTCAAGGGGAGGACATAGCTATGGCAGACGAGAGTGCGGAGGCAGATGACGTGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAGACGGATGCAAACATGGCATACTTGGTGGAGGAAGCGGAAGCAGCAGAGGAGATTGAGGAGATGGATGTTACAGAAGAGGTGGATGAGCCAAATAAAGGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAACTAGAGTGCCTTCCAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGATCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCGGCCTGTATTAATCGTGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATCAAAAATGCTGTTATTTTGTGTGTTAGAGGGAACAAAGGCTTCTGCGAGACATGCATGAGATTTGTTATGTTGATTGAAAAGAATGAGCAGGGGAATACAGAAAAGGGCCAAATTGATTTTAATGACAAAAATAGCTGGGAATTTCTTTTCAAGGAGTACTGGACAGATCTGAAGGGAAGCCTTTCTCTAACTTTTGACGAACTTGTTCACGCAAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAGACCTGACTCACCTGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAGAAAAGAAAAGCTAAGAAAAGGTCAAAAGCTCAAGCAAAGGAAATGAGTTCACCTAGTATGCCAGCTATACCTGATTCTCAAGGGCTATCCACGGATAACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTAATGCACATGAAGAACGGTGATGGAACTGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTATTAGAATATATTAAAAGGAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTTGAAAATTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAGGATGCCCAGACAAATAATCTCCAAGGGAGTGTTGCTGATACTGAATCAAGTCAGTTGGAGGCTGATGGCACTGATGGATTGGGAAAGAATAAGAAAGAGAAAAAACGCAGGGCACGGAAAAAAGGTGATGAGAGAGGATTGCAGTCTAACCTTGATGACTATGCGGCCATTGATATTCACAACATTAATTTAATTTACTTAAAGCGTAATTTGGTGGAATATCTGATCGAGGATGAGGAGAGTTTTCATGATAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTTGTTGGTACTAGCAAAGCATCCGAGCCTTATAAAATTGGTAAAAAGATGACCGATATCTTGCTAGAGATCTTGAATTTGAACAAGACAGAAGTGATTTCAATTGATATTATCTCAAATCAAGAGTTCACGGAGGAGGAGTGCAAGCGTCTCAGACAAAGCATTAAGTGTGGAATCCTTAACCGTTTGACAGTGGGTGACCTCCAGGAGAGAGCAATGTCGCTTCAAGATGCCAGAGTTAAGGATTGGATGGAAACTGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAAATGTGTTGAGAAACTACAGCTTTTGAAGACACCTGAGGAGCGGCAGCGCAGAATTGAGGAAATACCAGAAATACATGATGACCCAAATATGGATCCGAGTCATGAATCAGAAGATGAAGATGAAGCAGATGATAAGAGACGAGGAAACTACACCTTGTCAAGAAGTACAAGCTTTGGCAGGAGGATGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCAAATTTGAATGATTCCTGGAGCGGGACTAGAAACTTTTCTAACACGAATCGGGACTTGAGCAGGAACTTGTCTGGCAAAGGCTTCTCTAACCAAGGAGATGATGCCATTGGTTCTGGTGAAATAATAAACGAAAATTCATGGGGTCACGGAAGAGAGAGAGATGTTAAGAAAACAAACAAGTGGGACAAACAACAAGTTTCACCTAGTTCAGAAATCCCTGCTAGAAATGCCTCGTCTGGGGCCGCATCTGAGTTGTCTTCTGCTGTTAACTCAGTAAATCCAGCAGTATCTCCATCTGTGGGGACTACACAGAATGCTGCTACAGTTAATGAATCAGAGAAGATATGGCGTTATCAGGATCCTTCTGGGAAAGTGCAGGGACCATTTTCAATGGTGCAACTGCGTAAGTGGAGTAACACAGGTTATTTTCCTGCAGATTTGAGAGTATGGAGAACCTCAGACAAGCAAGAGGACTCCTTACTTTTGACCGATGTCTTAGCGGGAAAGATCCTGAAGGACACTTCACTGACAAGTAACAGTTTCCAAGCACAGTCGAATTCTTCTTCATTTGTTGGGAAGCCTCAGGGTGCCACTTTGCAGTCAGGTATGGATGGTCAGAATGCTGGCACTTCAAATTCACATACTAATCCAACTTCTTATGACCAATCTTCTGGAGGAAGATGGAAGTCTCAAAATGAAGTTAGCCCTACTGGTCGACCTGCCTCGGCTTCTATAGAAGTCCCTAGGTATTCAGGAGACAGATGGTCTTCTGACCATGGTAATAAGAATTTCACAAGTCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACGAAGGAGCAGCCGTTTCAAGTGGCTGCGTCGTTCATGGAGGCGAAATCACTCTCAGGAGGTGGTAGTGGTTTGCACGGTTCTTCACTTATGCAAGGGTCTGAAAATGACTCGTTGCGCTCACATCCAGTCTGGAATTCATCAGAAAAGGGCATGGGTTTAGGTACTATAAATGCACTCCAAAATCATCATTCTCAGCCAGTAAGGCAATCACCTAGCATTGATGATGCTTTAGTCAATCCAGCTGCAGATATTAAAAGCATTAGCGCAAATCTTCATAGTTTAGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCAAGGACACGGGTCCGTTCTGAAACGGGAAACAAATACTTCAGAGGCGTGGCAAAATGCACAATCTCTCAAAGCTGAATCAAACATTTCTTCTAGCATGCCACCAGCACAAACTCTTCACAGTCGTTGGGGGGAGATGTCGCCTGCACAAAATGCTGCTACATCGTTCAGTGCAGGAAGTTCAACATCAAGTTTTCCCTCGCCCGGTTTGTCCAGTTTTCCATCCTCCGACCCTTGGCGATCTACACCTCCTATTCCCAGTAACCTGCAACACATGCAGTCTTCAACTCCACCCAATCTACCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACCGTTCCACGACCAGGTTCGGAGCCTCAGAACCAAGCCTGGGGACCAATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGCACCGCCTCCAAATGCTACTGGTATGATGTGGGGAACTGCTGCTCAAAGTTCTGGTCCTGCAGGTACAAACCCAGGTTGGATTGCACCAGGTCAAGGGCCACCAGCAGGAAACAACATTCAAGGATGGCCAGCACACAGCCCAATGCCACCTCCGGTAAACGCAACTCCGGGATGGGTTGCCCCCAATGTTGCACCGATGCCACCTATGAATATGAATCCCAGTTGGCCTGTCCCATCCGCGAATCAGACCATGTGGGGTAATGAACATGGTAAAAATGGGGATAGATTCTCGAACCAAAAGGACAGTGGCTCTCATGGCGGAGATCCTGGGAATGGAGGTAAATCTTGGGGGATGCAACAATCTTTTGGTGGTGGTGGGAATTCTAGGTCTCCTTACAATAGAGTGCAAAAACTTTGCAAATACCATGAAAGTGGACATTGCAAGAAAGGAGGTACTTGTGATTACAGGCACAAGTAG 5367 45.13 MEAEEDDSSYHDPKSSLYVDDGNLDVKCDTNRELQSNEEQHCVSKSSIMETEFSPNTGVESLPPRDAILGDEILAVDTYSEMEKKDLVEETEIAGEKDFRNIIEDMAEDSVKLENEPDIAETGLLGQRVFADVKKNTGVSEEEGALSEFAEGELLPEMVLVGDAENQVEGNVLMANFSEDTVVEGSATVGCAETNEKTCLIDVLAEETLAETTLFVQDVDVTDATNLVKKTEVEENADDPNDSKDTEVPKQENLGVEERQLGVPVQLAENSELKVSSVDGAVVEEGQSTNLADRTGETLKMNVSSTIDEVGVTHFAGEINEAVNIGNTEDKTIEMGGMCVYDKATDVAMMENLADETPEIKGVELADYTIEELKIENVEDREAGVQGLGVADESPVVGKLENMADETAEAEEVQGTDYTAEDVQSENVEEDKTVQGEDIAMADESAEADDVVYLVDEGIGSEETDANMAYLVEEAEAAEEIEEMDVTEEVDEPNKGSSGSKRKRGKNSKAPTRVPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVMLIEKNEQGNTEKGQIDFNDKNSWEFLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKRKAKKRSKAQAKEMSSPSMPAIPDSQGLSTDNNVEWASKELLEFVMHMKNGDGTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQTNNLQGSVADTESSQLEADGTDGLGKNKKEKKRRARKKGDERGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKIGKKMTDILLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRAKCVEKLQLLKTPEERQRRIEEIPEIHDDPNMDPSHESEDEDEADDKRRGNYTLSRSTSFGRRMREPVSPGKGGSNLNDSWSGTRNFSNTNRDLSRNLSGKGFSNQGDDAIGSGEIINENSWGHGRERDVKKTNKWDKQQVSPSSEIPARNASSGAASELSSAVNSVNPAVSPSVGTTQNAATVNESEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRVWRTSDKQEDSLLLTDVLAGKILKDTSLTSNSFQAQSNSSSFVGKPQGATLQSGMDGQNAGTSNSHTNPTSYDQSSGGRWKSQNEVSPTGRPASASIEVPRYSGDRWSSDHGNKNFTSLPSPTPSSGGTKEQPFQVAASFMEAKSLSGGGSGLHGSSLMQGSENDSLRSHPVWNSSEKGMGLGTINALQNHHSQPVRQSPSIDDALVNPAADIKSISANLHSLVQSINSRNPPIEAQGHGSVLKRETNTSEAWQNAQSLKAESNISSSMPPAQTLHSRWGEMSPAQNAATSFSAGSSTSSFPSPGLSSFPSSDPWRSTPPIPSNLQHMQSSTPPNLPWGMGAPEGQSTVPRPGSEPQNQAWGPMPSGNPNMGWGPTAPPPNATGMMWGTAAQSSGPAGTNPGWIAPGQGPPAGNNIQGWPAHSPMPPPVNATPGWVAPNVAPMPPMNMNPSWPVPSANQTMWGNEHGKNGDRFSNQKDSGSHGGDPGNGGKSWGMQQSFGGGGNSRSPYNRVQKLCKYHESGHCKKGGTCDYRHK 1788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4581189 4594771 + ClG42_02g0050100.10 Clacu02g0501 242569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0501 1788 CDD PHD5_NSD 524 569 - -
Clacu02g0501 1788 Gene3D - 881 1011 IPR036128 GO:0003677(InterPro)
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1286 1344 - -
Clacu02g0501 1788 SUPERFAMILY GYF domain 1209 1271 IPR035445 -
Clacu02g0501 1788 CDD GYF 1218 1273 IPR003169 GO:0005515(InterPro)
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1103 1136 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 832 869 - -
Clacu02g0501 1788 SUPERFAMILY SWIB/MDM2 domain 741 821 IPR036885 -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1744 1762 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1167 1190 - -
Clacu02g0501 1788 ProSiteProfiles Zinc finger C3H1-type profile. 1763 1788 IPR000571 GO:0046872(InterPro)
Clacu02g0501 1788 CDD SWIB-MDM2_like 745 820 - -
Clacu02g0501 1788 SUPERFAMILY Plus3-like 881 1011 IPR036128 GO:0003677(InterPro)
Clacu02g0501 1788 PANTHER UNCHARACTERIZED 250 1787 - GO:0016593(PANTHER)|GO:1990269(PANTHER)
Clacu02g0501 1788 FunFam Zinc finger CCCH domain-containing protein 19 881 1010 - -
Clacu02g0501 1788 ProSiteProfiles SWIB/MDM2 domain profile. 739 822 IPR003121 -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1286 1384 - -
Clacu02g0501 1788 Pfam SWIB/MDM2 domain 747 820 IPR003121 -
Clacu02g0501 1788 ProSiteProfiles GYF domain profile. 1218 1272 IPR003169 GO:0005515(InterPro)
Clacu02g0501 1788 CDD Bbox1 570 595 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1483 1637 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1151 1166 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1403 1434 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 230 255 - -
Clacu02g0501 1788 SMART rtf1 880 990 IPR004343 GO:0003677(InterPro)
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 832 847 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 479 515 - -
Clacu02g0501 1788 SMART swib_2 740 825 IPR019835 -
Clacu02g0501 1788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 615 IPR013083 -
Clacu02g0501 1788 Pfam Plus-3 domain 885 988 IPR004343 GO:0003677(InterPro)
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1495 1589 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 670 739 - -
Clacu02g0501 1788 ProSitePatterns Zinc finger PHD-type signature. 525 585 IPR019786 -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 36 63 - -
Clacu02g0501 1788 Gene3D - 1220 1274 IPR035445 -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1045 1190 - -
Clacu02g0501 1788 ProSiteProfiles Zinc finger PHD-type profile. 522 588 IPR019787 -
Clacu02g0501 1788 SMART gyf_5 1219 1274 IPR003169 GO:0005515(InterPro)
Clacu02g0501 1788 FunFam Zinc finger CCCH domain-containing protein 19 514 614 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1362 1384 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1045 1064 - -
Clacu02g0501 1788 ProSiteProfiles Plus3 domain profile. 880 1013 IPR004343 GO:0003677(InterPro)
Clacu02g0501 1788 SMART PHD_3 524 570 IPR001965 -
Clacu02g0501 1788 SUPERFAMILY FYVE/PHD zinc finger 515 569 IPR011011 -
Clacu02g0501 1788 Pfam GYF domain 1221 1261 IPR003169 GO:0005515(InterPro)
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 230 254 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1398 1434 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1603 1618 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 40 58 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1 22 - -
Clacu02g0501 1788 Gene3D SWIB/MDM2 domain 735 830 IPR036885 -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 1711 1762 - -
Clacu02g0501 1788 MobiDBLite consensus disorder prediction 408 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0501 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0501 Clacu-Chr2:4581189 Clacu07g0887 Clacu-Chr7:22171731 9.20E-170 dispersed
Clacu02g0501 Clacu-Chr2:4581189 Clacu10g1948 Clacu-Chr10:33071633 6.50E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47200 PF03126 Plus-3 1.30E-24 No_clan Clacu TR