Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0505 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCTATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTTTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACGGGTGTGAAGCTTTCTTCGACTTGTTATTCGCATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCGGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTGTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTCGAAATTTTAGGTAAAAATTCTCAAATTATTATTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAACTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA 816 43.87 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSHQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEIVGFGNQNLERQQESLSTLKNTFEILGKNSQIIITRCWNGILGISMKTCKDEKMQQWVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4639427 4640522 - ClG42_02g0050500.10 Clacu02g0505 242573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0505 271 CDD Bbox1_BBX-like 58 100 IPR049808 -
Clacu02g0505 271 CDD Bbox1_BBX-like 5 47 IPR049808 -
Clacu02g0505 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Clacu02g0505 271 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Clacu02g0505 271 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Clacu02g0505 271 FunFam B-box zinc finger protein 21 1 98 - -
Clacu02g0505 271 Gene3D Classic Zinc Finger 1 100 - -
Clacu02g0505 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Clacu02g0505 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 216 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Clacu02g0505 271 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Clacu02g0505 271 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Clacu02g0505 271 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0505 Clacu-Chr2:4639427 Clacu09g1414 Clacu-Chr9:19608608 2.50E-34 dispersed
Clacu11g0546 Clacu-Chr11:5147407 Clacu02g0505 Clacu-Chr2:4639427 4.00E-47 wgd
Clacu02g0505 Clacu-Chr2:4639427 Clacu08g1617 Clacu-Chr8:25959372 4.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47201 PF00643 zf-B_box 3.30E-07 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0505 - - - 0.0