Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0509 ATGGGCGATACCCGTGGTGGTTGCTGTCCATCCATGGATCTCTTCCGCTCCGAGCCGATGCAGCTGGTCCAGCTCATCATTCCAATCGAGTCTGCGCATCGCACCATCTCCTACCTCGGTGATCTCGGCCTTCTTCAGTTCAAAGATCTCAATGCCGATAAAAGCCCATTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAGATGTTGAAGGCTGGATTGTCAAGCAAAAGCTCTGTGTCACAAGTTGATATCAATATAGATGACCTTGAGATCAAACTTGGTGAGCTTGAGGCAGAACTGGTTGAGATAAATGCTAATAGTGAGAAGCTGCAGCGTTCCTACAACGAACTTGTGGAGTATAAGCTTGTTCTCCAGAAGGCTGGAGAGTTTTTCAGTGCAGCACAGAGCAGTGCCGTAGAGCAGCAAAGGGAGTTTGAATCACGGCGAATTGGTGGAGATTCAATAGAAGTTCCGTTGTTGTTGGAACAAGAATCGTTTGTGGATCAGTCAAAGCCGGTTAATTTGGGATTTCTCTCTGGTCTTGTTCCTCGGGAAAAGTCTATGGCATTTGAAAGGATACTTTTTCGTGCTACCAGGGGCAATGTGTTTCTGAAGCAGGCTGCAGTTGAGGACCCTGTTGCAGATCCTGTTTCTGGAGAGAAGGTTGAGAAAAACGTGTTTATTGTTTTCTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGCGAGGCATTTGGTGCAAATCGATACCCTTTTACTGAGGACTTGGGGAAACAAGCCCAAATGATTGCCGAGGTTTCTGGGAAACTGTCTGAGCTGAAGACTACAATAGATTTAGGGCTGCTGCACCGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAAATTGGAATCTCCTGGCGAGGAAGGAAAAGTCCATATACCATATCTTGAACATGCTTAGCCTTGATGTAACAAAAAAATGTCTGGTTGCTGAGGGGTGGGGTCCTGTTTTTGCAACAAAACAGATTCAAGATGCACTCCAGCGAGCAGCAGCTGATTCCAACTCCCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACCGAAGCACCACCTACTTATTTTCGGACAAACAAATTCTCCTCGGCTTTTCAAGAAATTGTGGATGCATATGGGGTGGCAAGGTATCAAGAGGCAAATCCTGGTGTATACACCATTGTCACGTTCCCATTTCTATTTGCTGTTATGTTTGGCGATTGGGGGCATGGAATATGTCTGTTCCTTGCAACCCTGTATTTTATACTACGGGAAAAGAAACTTTCTTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTTTTTTCGATATACACAGGTCTGATCTATAATGAGTTCTTTTCTGTCCCATTTGGACTGTTTGGTCGCTCAGCCTATGAATGTCGTAGTTCTGATTGCAGTGATTCTACCACTATGGGGTTGATAAAGGTGGGTTCTACGTATCCATTTGGCTTGGATCCTGTATGGCACGGCACTCGAAGCGAGCTTCCATTTCTTAACTCTCTGAAAATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTCAGGAACAGCATTAATATTTGGTTCCAATTCCTGCCACAGATGATATTCCTAAACAGCCTTTTCGGCTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACTGGTTCAAATGCTGATCTGTATCACGTAATGATATACATGTTTCTGGGCCCTACTGGTGATCTGGCTGAAAACCAACTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTGCTCTTACTTGCCCTTGTTGCTGTGCCATGGATGCTGCTTCCGAAGCCTTTTCTTTTGAAGAGACAACACGAACAGAGGTTCCAAGGCCAATCTTATGCGCCCCTTCCAAGTGCTGATGATTCCCTCGAGTTGGATTCACATCATGATTCACATGGTCATGAGGAGTTTGAGTTCAGTGAGGTTTTTGTTCATCAACTTATACATACGATTGAATTTGTGCTTGGAGCAGTGTCAAATACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCGCACTCAGAGTTGTCAAGTGTGTTTTACGACAAGGTTCTTGTTCTATCTGCGGGGTTCAACAACATTATAATCTTGATAGTAGGCATTATCGTTTTCATTTTCGCTACCATTGGCGTGTTGCTGCTGATGGAGACTTTAAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTCGAGTTCCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCATCCTTTCTCATTTGCATTGCTAGATGAAGATGATGAATGA 2457 43.51 MGDTRGGCCPSMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNADKSPFQRTYAAQIKRCGEMARKLNFFKEQMLKAGLSSKSSVSQVDINIDDLEIKLGELEAELVEINANSEKLQRSYNELVEYKLVLQKAGEFFSAAQSSAVEQQREFESRRIGGDSIEVPLLLEQESFVDQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVFLKQAAVEDPVADPVSGEKVEKNVFIVFYSGERAKNKILKICEAFGANRYPFTEDLGKQAQMIAEVSGKLSELKTTIDLGLLHRGNLLQTIGEHFENWNLLARKEKSIYHILNMLSLDVTKKCLVAEGWGPVFATKQIQDALQRAAADSNSQVGPIFQVLLTTEAPPTYFRTNKFSSAFQEIVDAYGVARYQEANPGVYTIVTFPFLFAVMFGDWGHGICLFLATLYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGRSAYECRSSDCSDSTTMGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLGPTGDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKRQHEQRFQGQSYAPLPSADDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNIIILIVGIIVFIFATIGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFALLDEDDE 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4691372 4702456 + ClG42_02g0050900.10 Clacu02g0509 242577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0509 818 Pfam V-type ATPase 116kDa subunit family 38 810 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu02g0509 818 PIRSF ATP6V0A1 10 818 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Clacu02g0509 818 Coils Coil 93 127 - -
Clacu02g0509 818 PANTHER VACUOLAR PROTON ATPASES 12 816 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0509 Clacu-Chr2:4691372 Clacu02g2138 Clacu-Chr2:34552163 1.50E-297 dispersed
Clacu02g0509 Clacu-Chr2:4691372 Clacu08g1622 Clacu-Chr8:25996397 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0509 K02154 - csv:101211364 1528.07