Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0511 ATGAGTGTTGTGGGGTTTTCTTGTTCTTCTTCTTTTGTTGTGCTTATTGCTGTTTTGGCTCTGGTTTTGAATGGAGTTGAGGTATGTTATGGAGGTAAAACAAGCCAGTTTCTGAGGAAGGTTGAGAAAACTGTGGATATGCCTCTTGACAGTGATGTTTTTGCTGTTCCTCCTGGTTATAATGCTCCCCAGCAGGTTCATATCACACAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGGTCACTCCAAATAAACCAGGATCAAATAAAGTATTGTATTGGAGTGAGAAAAGCAAGCAAAAGAAACAGACCTTTGGGAAAGTATATACTTACAAGTTCTATAATTACACTTCTGGCTACATTCATCATTGCACCATTGACAACTTAAAGTACAACACCAAATACTACTATGAAGTGGGAATCGGGTACTCTCCAAGAACATTCTGGTTCGTCACTCCTCCAGAAGTCGGTCCCGATGTCCCCTATACATTTGGTCTCATAGGGGATCTTGGCCAGAGTTTTGATTCAAATATAACGCTGACACATTACGAACGAAACCCGCACAAAGGAAAAACAGTGTTATTTGTAGGGGATCTATCTTATGCTGATAATTATCCATTCCATGACAATGTAAGGTGGGATACATGGGGAAGATTTGCTGAGAGAAGTGTCGCCTATCAGCCTTGGATATGGACTGCAGGAAATCATGAAATTGATTTTGTCCCAGAAATTGGCGAGACCGAGCCTTTCAAGCCGTTTTCTAACCGATATCATGTCCCTTATAAAGCATCCGAGAGCACAGCTCCTTTTTGGTACTCAATCAAGAGAGGTCCAGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAATACAAATGGCTTGAAGCGGAGCTACCAAAAGTTAACAGAAGCGAAACACCATGGTTGATTGTTCTTATGCATTCCCCATGGTACAACAGCTACAACTATCATTACATGGAAGGAGAAACTATGCGAGTAATGTATGAGCCATGGTTTGTACAATACAAAGTTGACGTTGTCTTTGCTGGCCATGTCCATGCTTACGAAAGATCTGAAAGAATTTCAAATATTGCATACAACATTGTGAATGGCCACTGTATTCCAGTTAAAGATCAATCTGCACCTGTATACATAACAATAGGTGATGGAGGAAACCTTGAAGGCCTAGCAACCAATATGACGGAGCCACAGCCTGCGTACTCGGCGTATCGTGAAGCGAGCTTTGGCCATGGCATATTCGATATAAAGAACAGAACTCATGCATATTTCAGTTGGAACAGGAATCAAGATGGATATGCAGTTGAAGCTGATACTCTTTGGTTCTTCAACAGACACTGGTACCCGGTCGACGAGTCGTTAAGTGAGCGAAAATGA 1419 41.65 MSVVGFSCSSSFVVLIAVLALVLNGVEVCYGGKTSQFLRKVEKTVDMPLDSDVFAVPPGYNAPQQVHITQGDHEGKAVIVSWVTPNKPGSNKVLYWSEKSKQKKQTFGKVYTYKFYNYTSGYIHHCTIDNLKYNTKYYYEVGIGYSPRTFWFVTPPEVGPDVPYTFGLIGDLGQSFDSNITLTHYERNPHKGKTVLFVGDLSYADNYPFHDNVRWDTWGRFAERSVAYQPWIWTAGNHEIDFVPEIGETEPFKPFSNRYHVPYKASESTAPFWYSIKRGPAYIIVLASYSAYGKYTPQYKWLEAELPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERISNIAYNIVNGHCIPVKDQSAPVYITIGDGGNLEGLATNMTEPQPAYSAYREASFGHGIFDIKNRTHAYFSWNRNQDGYAVEADTLWFFNRHWYPVDESLSERK 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4716374 4719397 + ClG42_02g0051100.10 Clacu02g0511 242579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0511 472 Gene3D - 159 468 IPR029052 -
Clacu02g0511 472 Pfam Purple acid Phosphatase, N-terminal domain 63 152 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Clacu02g0511 472 CDD MPP_PAPs 160 458 IPR041792 -
Clacu02g0511 472 Pfam Iron/zinc purple acid phosphatase-like protein C 389 446 IPR025733 -
Clacu02g0511 472 PANTHER ACID PHOSPHATASE RELATED 12 459 IPR039331 GO:0003993(InterPro)
Clacu02g0511 472 SUPERFAMILY Purple acid phosphatase, N-terminal domain 44 156 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Clacu02g0511 472 Gene3D - 62 158 - -
Clacu02g0511 472 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 159 467 - -
Clacu02g0511 472 SUPERFAMILY Metallo-dependent phosphatases 160 466 IPR029052 -
Clacu02g0511 472 ProSiteProfiles Fibronectin type-III domain profile. 62 157 IPR003961 GO:0005515(InterPro)
Clacu02g0511 472 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 62 158 - -
Clacu02g0511 472 Pfam Calcineurin-like phosphoesterase 165 363 IPR004843 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0511 K22390 - - csv:101211612 941.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2061 Clacu-Chr1:32388936 Clacu02g0511 Clacu-Chr2:4716374 1.00E-189 dispersed
Clacu02g0511 Clacu-Chr2:4716374 Clacu06g1247 Clacu-Chr6:23342461 2.90E-155 dispersed
Clacu02g0511 Clacu-Chr2:4716374 Clacu08g1627 Clacu-Chr8:26053364 5.40E-202 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g11 . . . . . . . . . . . . . . . Cpe04g00114 . . . . . . . . Cla02g00499 Cam02g0509 Cec02g0509 Cco02g0515 Clacu02g0511 Cmu02g0507 Cre02g0840 . . . . . . . Cme01g01364 Blo04g00527 . . Bda14g00570 . . Bma03g00564 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01126 . Chy01g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97