Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0512 ATGTTCCGTAGCTGCGGGAGTCCGCTCTTCGCTTATCGACCTCTGTTCGTCGTGCCTCCCCCGCTCAGTCGTTGGTCGCTGATAAAGCTTTCAAGCAGCCATATGGGGAAGAACAAGAAACATAAGGACGGCGGCGAGAAGGGAGCCGCCGCCGGCGACCACTGCCCTTCCAAGGTCTTCGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGTCCGGTCCGGCGGTGCTTCATGGTTACTCAAAAGGGTTCAACTGAGCATTGCGGTTTTGGATTCGTGCAGTTTGCTGTAGCTGAAGATGCAAATCGAGCAATTGAGCTGAAGAATGGGATGTCTGTTGAAGGACGCAAAATTACTGTTAAACATGCTATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCTAAAGAAAATCAAGCTACTGCATCTAAGTCAACAATTAACGAGGAAGGAGATACTTCTAAAAGGGAAGAGCAAACAATTAACGAGGATAGAGATACTTCTAAAAGGGAAGAACAAACAACTAATGAGGATAGAGATACTTCTGAAAAGGCAGAACAAACAACTTCAAATTCCGAGGGGAAAGAGAGACATTTGAATGCTCGGAAATTAGCTTCACTTTCTAGTTATCTAGAGGATAAAGAGGGTCATTCAGGAAAGCAAAGGATTGCCAGGACTGTTGTATTCGGTGGTCTTCTTAATGCTGACATGGCTGAAGATGTTCACCGCCAAGCAAGAGATGTTGGCGACATATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTGAAGTCTGCACGTGCTGCTGTTACCATATTACACCAGAAAGAGATGAAAGGAGGTGTTGTATGGGCCCGACAACTGGGTGGAGAGCTTTTAAATATTGGAAGAAGTGACCTCCTGATCGGCTATAAGATTGTGGAGGACAGATTTGCGTTCACTGGAAGATCCAAGTTCCGTCTTTTGTTGTCCCTTATGGAACTTGGTCCAAAGGGGTCCAAAACTCAGAAATGGAAAGTTATTGTTAGAAATCTTCCATTTAAGGCCAAGGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGATGTGATGATGCCACATAGTTCAGACACAGGATTATCAAAGGGGTTTGCGTTTGTCAAATTTACATGCAAACAGGATGCTGAGAGTGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTCAAAGGACGATAGCTGTGGACTGGGCTGTTCCAAAGAAGATATATAGCTCGGGTGCTAGTGCTCCAGTTGATTCAGATGACGGGGAACAGACTGAAAGAGACAGAGAAGGTAGCATTAGTAGTGATGATTTCGAAGCTGAAAATACTGCTGTTCATGAGAAATCTCAGTGCTCCAACAAAGATGAAAGTTCTTCAGAGGATTCGGAGAAAGAAGATATTTCCTCGGAGGTTAATTTTGAAGGAGAAGCAGAAATGGCAAGAAAAGTTCTTGAAAATCTAATTTCATCTTCGGCTAAAGAGGCTCTTCCTTCTCCCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGATTTTGATTCGTCCAAGAAGTCATCTGATGTGTCTGATAAAGTATCAAATGAACCTGGAAAGTTAAATGAAAGCAAAACATCTATTCTTAAGCAAACAGATGAAGATGATTTGAAGAGAACTGTTTATATAGGCAATCTTCCTTTTGATATTGATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTTGGTGAAGTGCTATCCTTTGTGCCAGTCCTTCATCAGGTTACAAAGCGACCTAAAGGCACTGGTTTTCTCAAGTTTAAAACGGTCAATGCTGCTACTGCTGCTGTTTCTTCTGCAAATGTTGCATCTGGTGTGGGAATATTTCTGAAAGGCAGGCAACTGAAAGTATTGAATGCCCTGGATAGAAAATCAGCTCATGACAAGGAATTGGAAAAGTCCAAAAATGACAATCATGACCACCGGAATCTTTATCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGAGTTTCTGCTAGTGATATGGAGAAACGTCAAAGGCTGGAAAAGAAAAGAACGACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAGGACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAAGAACTTCAAAAACTTTGCATTGAAGCAGTTACCTCACGAGCTACAAAACAAAAACCCGTGATTCGACAGATTAAGTTCTTAAAGGATGTGAAGAAAGGAAAGCTACTGACAAAAAATCACTCCTGTGGAGTCGCTTTCGTTGAGTTTTCTGAGCATGAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTATAAATCGCCCGATCGTAGAGTTTGCTATTGACAATGTTCAAACGTTGAAGTTGCGTAAAGCAAAGTTACAAGCTTGGTCACAGGACAATACAGCCAATGTTCCCAAAGCCTGGCAAGGGAATGCGAATACTGATACAATTGCTGGGGATGTCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATGGGTGATAATCGTCCGGTGCGCAACAAAGATGAAAATGACAATCATGTGTCCAATGATGTGGCGATGGAAGAAAATAGAGCTATAAAAAAGAGGAAAACACGTCCAGAAATCGGTAATACAAACAAGTCGCTGAGACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGATCAACAGATCGGTATCCATGGATTCTGGAAAAATAAAAGCTTCTCAGGAAGCTGATGTACAACACAAAAAGAAGGTAAAACATCAAGTAGAGCAGCAGAGGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGGCGGGATGTTGTCGATAAACTCGACGTGCTTATTGAACAATATCGATCCAAGTTCTTGCAGCAGAGGTCAGACCGAACAGATGGTGAAAAGAAAGGCTCTAAACAGGGCTCCCTTTTGATGGCCAAACCCAAGGCTCCGAGGCAAACCCTAGATTCTTACACTGTCAAACGCATCAACAAAACCATTAAAGCCGGCGATTGCGTGCTTATGAGGCCCTCCGAACCCTCGAAACCTTCGTATGTTGCTAAGATTGAGAAGATTGAGGCTGATTCTCGTGGGGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCAATTGGCGGTCGGAGACAGTTTCATGGCTCGAAGGAGCTGTTTCTCTCCGACCATTATGACGTTCAAAGCGCCGACACTATCGAGGGAAAGTGTACGGTGCATACGTTTAAGAATTATACCAAGCTTGATGCCGTTGGAAATGATGATTATTTTTGCCGTTTCGACTATAATTCCACTACTGGAGCTTTCAATCCCGATCGAGTGGCTGTGTATTGCAAGTGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAGCTGCAGTGACTGGTTCCATCCTGCTTGTATAGAAATGACTGCAGAAGAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGTTGTTCTTCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGGCTACATCTAAAGTTGCAGAGACTAAGGTGGATACAAAACGACGCCGGAGGTGA 3762 43.12 MFRSCGSPLFAYRPLFVVPPPLSRWSLIKLSSSHMGKNKKHKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHCGFGFVQFAVAEDANRAIELKNGMSVEGRKITVKHAMHRAPLEQRRSKENQATASKSTINEEGDTSKREEQTINEDRDTSKREEQTTNEDRDTSEKAEQTTSNSEGKERHLNARKLASLSSYLEDKEGHSGKQRIARTVVFGGLLNADMAEDVHRQARDVGDICSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMKGGVVWARQLGGELLNIGRSDLLIGYKIVEDRFAFTGRSKFRLLLSLMELGPKGSKTQKWKVIVRNLPFKAKEKEIKDTFSSAGFVWDVMMPHSSDTGLSKGFAFVKFTCKQDAESAIKKFNGQKFGQRTIAVDWAVPKKIYSSGASAPVDSDDGEQTERDREGSISSDDFEAENTAVHEKSQCSNKDESSSEDSEKEDISSEVNFEGEAEMARKVLENLISSSAKEALPSPIDGNPPSKVNKEPDFDSSKKSSDVSDKVSNEPGKLNESKTSILKQTDEDDLKRTVYIGNLPFDIDNEEVKQRFSGFGEVLSFVPVLHQVTKRPKGTGFLKFKTVNAATAAVSSANVASGVGIFLKGRQLKVLNALDRKSAHDKELEKSKNDNHDHRNLYLAQEGIILEGTPAAEGVSASDMEKRQRLEKKRTTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKLLTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNTANVPKAWQGNANTDTIAGDVHSNKNNSRKRKAMGDNRPVRNKDENDNHVSNDVAMEENRAIKKRKTRPEIGNTNKSLRQKPEGRRSMPEKSINRSVSMDSGKIKASQEADVQHKKKVKHQVEQQRKRPKKNKEPIGRDVVDKLDVLIEQYRSKFLQQRSDRTDGEKKGSKQGSLLMAKPKAPRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNDDYFCRFDYNSTTGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIEMTAEEAKKLDHFFCESCSSEGQKKLQNSQATSKVAETKVDTKRRRR 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4722502 4746394 - ClG42_02g0051200.10 Clacu02g0512 242580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0512 1253 CDD RRM4_RBM28_like 746 843 - -
Clacu02g0512 1253 SUPERFAMILY FYVE/PHD zinc finger 1168 1230 IPR011011 -
Clacu02g0512 1253 Pfam BAH domain 1059 1172 IPR001025 GO:0003682(InterPro)
Clacu02g0512 1253 Pfam PHD-finger 1179 1224 IPR019787 -
Clacu02g0512 1253 Gene3D - 1020 1170 IPR043151 -
Clacu02g0512 1253 Gene3D - 745 840 IPR012677 -
Clacu02g0512 1253 SUPERFAMILY RNA-binding domain, RBD 594 824 IPR035979 GO:0003676(InterPro)
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 865 884 - -
Clacu02g0512 1253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 746 854 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 PANTHER RNA-BINDING MOTIF PROTEIN 14B 54 1033 IPR051945 GO:0003729(PANTHER)
Clacu02g0512 1253 SMART PHD_3 1178 1225 IPR001965 -
Clacu02g0512 1253 Gene3D - 570 695 IPR012677 -
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 1228 1242 - -
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 158 209 - -
Clacu02g0512 1253 CDD BAH_BAHCC1 1059 1194 - -
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 453 515 - -
Clacu02g0512 1253 Pfam RNA recognition motif 371 440 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 Pfam RNA recognition motif 59 129 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 Pfam RNA recognition motif 596 656 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 134 209 - -
Clacu02g0512 1253 SUPERFAMILY RNA-binding domain, RBD 364 459 IPR035979 GO:0003676(InterPro)
Clacu02g0512 1253 SMART BAH_4 1058 1174 IPR001025 GO:0003682(InterPro)
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 553 574 - -
Clacu02g0512 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1171 1242 IPR013083 -
Clacu02g0512 1253 ProSiteProfiles BAH domain profile. 1058 1174 IPR001025 GO:0003682(InterPro)
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 1228 1253 - -
Clacu02g0512 1253 SUPERFAMILY RNA-binding domain, RBD 57 315 IPR035979 GO:0003676(InterPro)
Clacu02g0512 1253 Gene3D - 359 492 IPR012677 -
Clacu02g0512 1253 CDD RRM2_RBM28_like 370 446 - -
Clacu02g0512 1253 FunFam RNA-binding motif protein 28 745 840 - -
Clacu02g0512 1253 Gene3D - 29 149 IPR012677 -
Clacu02g0512 1253 ProSitePatterns Zinc finger PHD-type signature. 1179 1224 IPR019786 -
Clacu02g0512 1253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 594 677 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 1018 1047 - -
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 536 580 - -
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 885 933 - -
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 865 999 - -
Clacu02g0512 1253 CDD RRM1_RBM28_like 58 136 - -
Clacu02g0512 1253 MobiDBLite consensus disorder prediction 462 515 - -
Clacu02g0512 1253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 369 447 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 SMART rrm1_1 370 443 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 SMART rrm1_1 595 673 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 SMART rrm1_1 58 131 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 SMART rrm1_1 747 838 IPR000504 GO:0003723(InterPro)
Clacu02g0512 1253 ProSiteProfiles Zinc finger PHD-type profile. 1176 1227 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0512 K14573 - - csv:101217384 1553.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0225 Clacu-Chr2:2114656 Clacu02g0512 Clacu-Chr2:4722502 2.70E-81 dispersed
Clacu02g0512 Clacu-Chr2:4722502 Clacu10g1802 Clacu-Chr10:31646801 6.30E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47202 PF01426 BAH 8.70E-22 No_clan Clacu TR