Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0522 ATGAACAGAGCATTACCGGAGATGTTGCATTGTTTGAACACTACCGGGAACTGTCCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAGCTGTTTCAATAAGGTTGATTACGGCGGTGGATTTCCGCCGCCGGTGGCTGTTCCAGCGGATCACTTCACGGGGTTTCCTGGGTACATGAATGGCGGCGGCGGTGGTGGAGGTGGTGGGTTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGTCTGACCCTGGGTTGAATGATGGGTGGTCTGAAATGGGAAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGATAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACTACTACCACCACCACCAACAACAACAACAATAGCAAGGTGACTGTGGAAGAAGATAACATCAGCAGCAGCAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGTACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCTACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTCCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCCCCATCTTGCACCACCGCGAACTTCCCGACGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGCCGCGGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAACTTTCCTTGATTCATCTTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAGGCATTATAAAGATGGAAATGTGA 1392 46.19 MNRALPEMLHCLNTTGNCPDTLSVLERQRARLKWQQDQLLQQQQQPLNQSCFNKVDYGGGFPPPVAVPADHFTGFPGYMNGGGGGGGGGLSLVEMVMGAVKSDPGLNDGWSEMGKFDPSLLLNATAYELNSSLSRTSSCPPAVAPTVAEKMGSAAGRDSFKKRKAEKVHNTTTTTTNNNNNSKVTVEEDNISSSKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTTANFPTIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDAAALRRTISAPVSFPETFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGGIIKMEM 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4882399 4885203 - ClG42_02g0052200.10 Clacu02g0522 242590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0522 463 MobiDBLite consensus disorder prediction 236 250 - -
Clacu02g0522 463 Gene3D - 258 332 IPR036638 GO:0046983(InterPro)
Clacu02g0522 463 Pfam Helix-loop-helix DNA-binding domain 265 312 IPR011598 GO:0046983(InterPro)
Clacu02g0522 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 311 IPR011598 GO:0046983(InterPro)
Clacu02g0522 463 MobiDBLite consensus disorder prediction 148 250 - -
Clacu02g0522 463 FunFam Basic helix-loop-helix transcription factor 258 330 - -
Clacu02g0522 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 330 IPR036638 GO:0046983(InterPro)
Clacu02g0522 463 SMART finulus 267 317 IPR011598 GO:0046983(InterPro)
Clacu02g0522 463 MobiDBLite consensus disorder prediction 189 207 - -
Clacu02g0522 463 CDD bHLH_AtBPE_like 251 336 - -
Clacu02g0522 463 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 152 378 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu02g0522 463 Coils Coil 22 45 - -
Clacu02g0522 463 MobiDBLite consensus disorder prediction 155 169 - -
Clacu02g0522 463 MobiDBLite consensus disorder prediction 208 235 - -
Clacu02g0522 463 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0522 Clacu-Chr2:4882399 Clacu08g1061 Clacu-Chr8:20631801 6.50E-35 dispersed
Clacu01g0735 Clacu-Chr1:7927227 Clacu02g0522 Clacu-Chr2:4882399 3.70E-42 transposed
Clacu05g0833 Clacu-Chr5:7173494 Clacu02g0522 Clacu-Chr2:4882399 6.10E-40 transposed
Clacu05g2534 Clacu-Chr5:33423764 Clacu02g0522 Clacu-Chr2:4882399 6.40E-39 transposed
Clacu05g2857 Clacu-Chr5:35779022 Clacu02g0522 Clacu-Chr2:4882399 7.30E-36 transposed
Clacu08g1834 Clacu-Chr8:27605526 Clacu02g0522 Clacu-Chr2:4882399 1.10E-29 transposed
Clacu09g0843 Clacu-Chr9:7767241 Clacu02g0522 Clacu-Chr2:4882399 1.50E-37 transposed
Clacu10g1713 Clacu-Chr10:30633253 Clacu02g0522 Clacu-Chr2:4882399 1.40E-35 transposed
Clacu11g0583 Clacu-Chr11:5542861 Clacu02g0522 Clacu-Chr2:4882399 4.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47203 PF00010 HLH 1.30E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0522 - - - 0.0