Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0544 ATGGCGGTTTCCGGTAGCAATTCGACCCAGATTCACCCTTCCGACGAATCTCCCTCCAGTTCTTCCAAAACTTCGCTATCAAACTTGAAAATCTACGCTGCGATCGGTATAATAGCTGCATGTGTGATTGCCGCCTCTGCTCTGATCTTCCTCTGTATCCGTAGAAGTAGAGACTCGAGGAAGCACAAAATGCGGGTGAAACATAGTTCTGGATTGATTCCATTGGTTTCCAAGGAGATCGCTGAGATTAAAGAGCCCGATCGGACTGCAGATTGCGAGAAAGGGGAAGTCGTTAGGGTTGAGAATAAGAAGGAGATTGAGTTCGAGAATGGAGTAGGTAAGAAGAGTCAAGAGAGCGACGTGTCCGGCGGTGGTCGAAGCGACGTGTCGGTGGAGGATCCGAACTTAGGGTGGGGACGGTGGTACAGCTTGAAGGAACTGGAAATAGCGACTGATGGGTTTCTTGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCACCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAAGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCTATTGGAAAAGTGAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGATGGAGCACAGAGGATGCTTGTGTATGAATTTATTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCTGTTAGTCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGAACGGCAAAGGGTTTGGCCTATTTGCATGAGGGTTTAGAGCCTAAAGTTGTTCACCGTGATATAAAGTCCAGCAACATTCTCTTAGATAGAAAATGGAATGCAAAAGTGTCAGATTTTGGACTTGCAAAGCTCTTACAACCCGAAGCCAGCTATGTAACTACTCGTGTAATGGGTACCTTTGGATATGTCTCCCCGGAGTATGCAAGCACAGGCATGCTTAATGAGGGGAGCGATGTATACAGTTTCGGTGTTCTACTTATGGAGATCATCACTGGCAGAAGCCCGATTGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAAATCGACGTGGGGAAGAGGTCGTAGATCCGTTGATTGAGATTCCACCCTCTCCAAGAACTCTAAAGAGAGTGTTGCTTGTTTGTCTACGCTGCATTGATTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATTGTTCATATGCTAGAGGCAGATGATTTTCCTTATCGTTCAGAGCTTCGATCTGTTCGAGAGAAAGATAACCAGCCTGCTCGTTTAGACGTGCCGAGTAAACTTCCATTGAAGCATGCTGGAATAGATGACACGGAATCAAGAAAGAGATAA 1413 46.57 MAVSGSNSTQIHPSDESPSSSSKTSLSNLKIYAAIGIIAACVIAASALIFLCIRRSRDSRKHKMRVKHSSGLIPLVSKEIAEIKEPDRTADCEKGEVVRVENKKEIEFENGVGKKSQESDVSGGGRSDVSVEDPNLGWGRWYSLKELEIATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCADGAQRMLVYEFIDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNQPARLDVPSKLPLKHAGIDDTESRKR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5163204 5166840 + ClG42_02g0054400.10 Clacu02g0544 242612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0544 470 SMART serkin_6 154 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0544 470 MobiDBLite consensus disorder prediction 438 470 - -
Clacu02g0544 470 MobiDBLite consensus disorder prediction 1 24 - -
Clacu02g0544 470 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Clacu02g0544 470 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Clacu02g0544 470 Pfam Protein tyrosine and serine/threonine kinase 158 425 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0544 470 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Clacu02g0544 470 PANTHER OS01G0323000 PROTEIN 20 445 IPR052232 -
Clacu02g0544 470 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Clacu02g0544 470 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0544 470 CDD STKc_IRAK 160 426 - -
Clacu02g0544 470 SUPERFAMILY Protein kinase-like (PK-like) 130 426 IPR011009 -
Clacu02g0544 470 Gene3D Phosphorylase Kinase; domain 1 129 229 - -
Clacu02g0544 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0544 Clacu-Chr2:5163204 Clacu05g0159 Clacu-Chr5:1509447 2.40E-141 dispersed
Clacu01g1665 Clacu-Chr1:28778551 Clacu02g0544 Clacu-Chr2:5163204 1.10E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73323 PF00069 Pkinase 3.50E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0544 - - - 0.0