Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0580 ATGGAAGAACAAAGCACCGCTATAATTTTAGCTAGAGCCACGGAGTTGAGGCTAAAGATTAGAAACTCTGTTAACACCACCACCACCAGTTCCGCCGTAAATTCCCGGGAGATTCGGGATGATCGGTTTTCTGTGGATGAAAATAATGGCGTTGTTGGTTCCCGCCGGAGTGAGGCGGATGCGAGTGGTGGGGAGGCGGAGGAAGATGAGGAAGCGGTGAGGCTTTTGAACATCTGCGATGCACTCGAGTCTCTTGAGAATCAGCTTTCTTCGTTGCAGGATTTACAACAACGGCAAAGGTATGAGAAAGAAGTAGCCCTTTCTGAGATCGAACATAGCCGCAAGATTTTACTGGATAAACTGAAGAAGTACAAAGGAGGGGATTTGGAAGTGATACATGAGGCTTCAGCTTTTGTTGGTGAGACAGTGCAGCACAACCAGGATTTCATGCTTCCTCCATATCCAAGCCATCTTGGTAATGGCTACTTACATCCCTTCCCTTCTGGACCCAAATCTGTGAGTAATGGGCTAATCGACGCCACATCAAATAAAGCTACAAAGAAACTTAACAAATCAGAAAGGAAACTATCAAAATCGGATTCTCAGAACTCGAAGAATGGATTGGGATTTTTCATTAGTGTAGCTGCAAAATCAGTGGTTACTATTGTTGGCATAGTATCCATACTCCACTTGACTGGTTTTAGACCAAAGTTTGTAAGGAAAGTTGCTGCTTTGAAGGTTTTCGACGTTTTTCGACAGTCTGCAGGTGGAAATAATGGATCACACAACGCATGTCCTCCGGGTAAATTCCTCATGATGGAAGACGGGGAAGCTCGATGTGTAGTGAAAGAGAGAATTGAAGTTCCATTTTCTTCAGTTGTGGCTAAACCAGATGTAAACTATGGAAGCGGTTCTTCACAGGCCAGAAATGGAACCTTCTTTGGGACCCATCATATCCACATGCTGTGGATTGTGGACGATGCCATTGCTGCCAACGCCAAGCTGAGGAACTATTCTCTGCGGTCACCGGCTTTAACCACAGTGCCTTCCTCTTTATCTAGAACTGGGTTCTCAGACAAGCCATTGTTGAATGCTCAACCCCTGAAATTATCGAATAAGAAAACATACCCACTTGCAGGAAGGCTCAAATTTCTTCACATCAGAGCTCAAGCTTCTTCCAGCACAAGCAATGTTAGCTCAGAGGCAGCTCCAGCAATTTCAAAGAAGGAAGATTCGAAGGACGAGGATCTTGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTGAGGGAGCTTTTGAAACTTGGATTCCGTGTAAGAGCTGGTGTAAGGAGTTCTCAGAAAGCTGAAACTCTTGTTGAGAGTGTTAAAAAGATTAAGCTTGATGAAGCTGTAGAAAAGCTTGAAACTGTGGTATGTGACTTGGAGAAACCAAACCAGATTGGACCTGCATTAGGGAATGCATCAATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATTACTGGACCTTATCGAATTGACTATCTGGCTACCAAAAACTTGGTTGAAGCAGCAACTGTGGCAAAAGTGAAGCACTTTGTTCTGCTTACGTCCCTGGGAACCAACAAGATCGGATTTCCTGCTGCCATTCTCAATTTGTTTTGGGGAGTCCTATTATGGAAAAGGAAGGCAGAAGAAGCATTGATTGCAAGTGGTCTTCCTTATACAATAGTGAGACCTGGAGGCATGGAGAGGCCTACAGATGCTTTCAAGGAAACTCATAATACTACTCTGTCACCAGAAGATACTTTATTTGGTGGTCTAGTGTCAAACCTTCAGGTTGCAGAGCTAATGGCATCCATAGCAAAAAATCCTGGTCTTTCATACTATAAAGTGCTAGAAGTAATTGCTGAGACAACTGCACCATTGACTCCCCTGGAGGATCTTCTTAAAAAAATACCATCTAAAGTTGCAAATGCTTTCCCAGAGAAGGAATATGGTGCTGTACGAACTGTTGATCCATCACCAAAACAGTCGAGCATTGCCAAAGAAAAGGAATCAGCTGAAGCAAATGTTACAGAACAGCCACCCCCTCAAAGTGTTTCATCAGAACAGTTGAGCATCGCAAAGGAGAAGGAATCAGCAGTAGCAAATGTTACAAAACAGTCATCATCACCCTACATTGCGTATGAGGATTTAAAACCTCCAACGTCTCCTACTCCAGCTGCACCTGTTGGGAAAATAGATTTAAATGTTGTTGAAGGAGTCTCATCTGGTGCTCAAACTATTTCAGCAGAGGCACCAACTGAAATTGCCGAGGCAAATCCCGCACCTGCACCTGCCCCTGAAAAAGCAGTGACATTGAGACCTCTCTCCCCTTATGTAGCATATGAAGATTTAAAGCCTCCTGCATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCTTCAACATCTCCCTCAAATGGTCCACCTGAGCCCGCTACCTCCACCGTAAATAGCACATTGCCGATTCCAGAGGCAGAAGACTCAAAGAGTGAAGCACATCTTCCCAAGCCGAAGAAGCAACAACCGTTATCACCTTTTACCATATATGAAGATTTAAAGCCTCCTACATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCTTCTTCATCTCCCTCAAATGGTCCACCTGAGCCCGCTACCTCCACCGTAAATAGCACATTGCCGATTCCAGAGGCAGAAGACTCGAAGAGTGAAGCACATCTTCCCAAGCTGAAGAAGCAACAACCGCTATCACCTTTTACCATGTATGAGGATTTGAAGCCTCCAGCATCTCCAACGCCCTCTCTTTGA 2844 44.41 MEEQSTAIILARATELRLKIRNSVNTTTTSSAVNSREIRDDRFSVDENNGVVGSRRSEADASGGEAEEDEEAVRLLNICDALESLENQLSSLQDLQQRQRYEKEVALSEIEHSRKILLDKLKKYKGGDLEVIHEASAFVGETVQHNQDFMLPPYPSHLGNGYLHPFPSGPKSVSNGLIDATSNKATKKLNKSERKLSKSDSQNSKNGLGFFISVAAKSVVTIVGIVSILHLTGFRPKFVRKVAALKVFDVFRQSAGGNNGSHNACPPGKFLMMEDGEARCVVKERIEVPFSSVVAKPDVNYGSGSSQARNGTFFGTHHIHMLWIVDDAIAANAKLRNYSLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSTSNVSSEAAPAISKKEDSKDEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLDEAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASEKEIFDITGPYRIDYLATKNLVEAATVAKVKHFVLLTSLGTNKIGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDAFKETHNTTLSPEDTLFGGLVSNLQVAELMASIAKNPGLSYYKVLEVIAETTAPLTPLEDLLKKIPSKVANAFPEKEYGAVRTVDPSPKQSSIAKEKESAEANVTEQPPPQSVSSEQLSIAKEKESAVANVTKQSSSPYIAYEDLKPPTSPTPAAPVGKIDLNVVEGVSSGAQTISAEAPTEIAEANPAPAPAPEKAVTLRPLSPYVAYEDLKPPASPSPSAPSLSFSSTSPSNGPPEPATSTVNSTLPIPEAEDSKSEAHLPKPKKQQPLSPFTIYEDLKPPTSPSPSAPSLSFSSSSPSNGPPEPATSTVNSTLPIPEAEDSKSEAHLPKLKKQQPLSPFTMYEDLKPPASPTPSL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5572846 5587087 - ClG42_02g0058000.10 Clacu02g0580 242648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0580 947 Gene3D - 414 658 - -
Clacu02g0580 947 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 339 946 IPR044719 -
Clacu02g0580 947 CDD SDR_a5 418 640 - -
Clacu02g0580 947 MobiDBLite consensus disorder prediction 879 909 - -
Clacu02g0580 947 MobiDBLite consensus disorder prediction 798 947 - -
Clacu02g0580 947 MobiDBLite consensus disorder prediction 765 786 - -
Clacu02g0580 947 Coils Coil 75 102 - -
Clacu02g0580 947 MobiDBLite consensus disorder prediction 669 722 - -
Clacu02g0580 947 MobiDBLite consensus disorder prediction 811 841 - -
Clacu02g0580 947 Pfam NAD(P)H-binding 422 626 IPR016040 -
Clacu02g0580 947 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 418 636 IPR036291 -
Clacu02g0580 947 MobiDBLite consensus disorder prediction 693 710 - -
Clacu02g0580 947 MobiDBLite consensus disorder prediction 45 67 - -
Clacu02g0580 947 FunFam Protein TIC 62, chloroplastic 414 657 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0580 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0580 Clacu-Chr2:5572846 Clacu09g1835 Clacu-Chr9:33069974 1.20E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g545 . . . . . Bpe12g00072 . . Cmo19g00656 . . . . . Sed10g2078 . Cpe15g00519 Bhi05g01180 Tan02g0850 Cmetu01g2149 . Hepe02g0546 . . Cla02g00555 Cam02g0580 Cec02g0582 Cco02g0592 Clacu02g0580 Cmu02g0576 Cre02g0906 Cone12ag1129 . . . . Csa07g00828 . Cme01g00005 . Blo13g00558 Bda15g00020 . . . . . . . . . Cma19g00645 . . . . . . . . . . . . . . . . . . Lsi11g01056 . Chy01g00006 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57