Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0591 ATGATTCGTTTCAAAATTCTTAAGCTTTCTTCTCTGAACTTCAATCCAATCACTAATTCCCAATCCTTCGCACCCTTCTCTTCGATTTCTCTCCAAAAAACTCCACCGGAATCTCCATTTTCATCTCCAAATTCAACAACAAACGCCCCTTCGCCTCTAACCCATCATTTTCTCGAACAATCGGCCCGATCCTCTCAGTGGCATTTCATCAAACAGGTAGAATCCACTCTCACTCCCTCGCTTATCTCTGAAGCCCTTCAAAATCTCCACGAATCTCCACAGATTGTTCTCGACTTGTTAAACCATTTACATCATCAATTACTTGATGCCGAAACTCTTTGCCTTGCCATTGTCATTGTTGCTCGTCTTCCATCTCCCAAACCCACTTTACAGCTTCTCAAACAGGCTGTTGGGTGTGGCACTACTAATTCAATTAGCGAGATTTTTGAATTGTTAGCTGCTTCTCGTGATCGTTTGGGTTTTAAAAGTTGTATTGTTTTTGACCACTTGATTAAGTCTTGTTGTGAAATGAATGGGGTAGATGAGGCTTTTAAGTGTTTTTACATGATGAAGGAAAAGGGTATTTTACCTAAGATTGAGACCTGCAATGATTTGTTGAGTTTGTGTCTGAAGTTGAACAGGATTGAGGCAGCTTGGGTTTTATATGCTGAGATGTTTAGATTGAGAATAAAATCTAGTGTTTATACATTTAACATTATGATTAATGTTCTATGCAAGGAGGGGAAGTTGAATAAGGCTAAGGATTTTATTGGGCATATGGAGAGTTTAGGGGTTAAACCCAATGTCGTTACGTATAATACAATTGTTCATGGATATTGTTCGAGAGGGAGAGTTGAAGGGGCTGATGCTATTTTGAATACTATGAAAAGGAAAAATATTCAACCTGATTCATACACATATGGCTCTCTTATCAGTGGGATGTGCAAGCAAGGAAGACTTGAAGAAGCATCAAAGATTTTTGAAGAAATGGTACAAATTGGGTTGCTTCCTAGTGCTGTAACTTATAATAGTTTGATTGATGGATTTTGCAATAAGGGTAATTTGGATATGGCCTTTGCTTATAAAGATGAGATGTTGAAGAAGGGCATAATGCCAACTGTGTCAACTTATAACTTGTTGATTCATGCATTGTTTATGGAACAAAAAATAGATGAAGCTGAAGGTATGATCAAAGAAATTCAGGAGAAAGGAATGTCTCCTGATGCTATTACATATAATATCTTGATTAATGGGTATTGTAGATGTGGAAATGCAAAGAAAGCGTTTCATCTACATGATCAAATGTTGGTGAGTGGTATTCGGCCGACAAAAGTGACATACACATCACTTATTCATGTTTTGAGCAAAAAGAACAGAATGAGGGAGGCAGATGATTTGTTTAAGAAGATCACAAGTAAAGGTGTGTTGCCTGATGTCATTATGTTTAATGCTTTGATCGATGGTCATTGCTCTAACGGTAATGTCGAGCGTGCATTTGAGCTTCTGAAAGATATGGATAGGATGAAGGTTCCACCCGATGAAGTGACTTTCAATACCATAATGCAAGGGCGTTGTAGGGAAGGAAAAGTTGAAGAAGCTCGTGAACTTTTCAATGAGATGAAGAGAAGAGGGATTAAGCCCGATCATGTTAGTTTCAATACGCTAATAAGTGGTTATAGTAGACGAGGTGACATAAAGGATGCTTTCAGAGTACGAGATGAGATGCTCGATATAGGATTCAATCCAACTCGTTTAACTTATAATTCTCTTATACGTGGGTTATGCAAAAACCAAGAAGGTGATCATGCTGAAGAGCTCCTTAAAGAAATGGTCAGTAAAGGAATTACACCTGATGATAGCACTTATTTCTCATTGATTGAAGGTGACACCATCAATCTTTCTTCCCCTTTGGTTGACAAAGTTAGAGACCATGGACCAGTGAAATTTGTGCTCATCTCTGCTCGAACGAGCAGGACGTTGTCTTTTGTCTTCACCTTTCCCTGTATCAATGATCAAATCATAACAATAAAGGAAGGCACAAGAGATAAGATTATGAAAGACTTTATTACAGATTGGAAATGGATATTGAAAAGTGGGTCAAGGAAAGTCCAAAAGCTTTATTCTAGAGTTTTGAAAATAGAGGTTTCAATGGGGCAATTTGTACCTCATGTAGCTTCTGGTTTTGTATTCACTCTTCTTGGCCTTTGGCATACTGTGAATACAATCAAAACCTACAATCTCAGAGGCTCTTCAAATTTCAAAGTAAGATTTTGGTACCCCCTCGATCGACCGCTTTCCAAACTCAAGTACTTGGAGCTCGTTTTCGTGTTCTCTTTTTCAATCATCGCAATTTTCAGACAATTTTGGTACTACCCTTTTGTTCACTTGTCTTTCAAAGTCATCAACTTCGAGCACGCAACCATGTTCCTGCACCTTGCCATATTTTCGGGTTTTACCCTCTACAACGAGCTGAATCGTTCATCAAATGTATTATCTGGTGTCGAGGGCGTCTTTGCAGCCTGCGTTTTCAGTCAAGAACTATTCTTGCTCCATTTCCACTCGGCTGACCACAATGGCATTGAAGGTCACTACCATTGGCTCTTGCAGCTCATAGTGTTCGCATCTCTCGTGTCGGTACTCGTAGCTGCTTGTTGTCCTACCAACTTCCCTGCAGCTCTTGTTCTTTCATTATTGGTTGTTTTGCAAGGGTGTTGGTTTATGAACATGGGGTTCATGCTATGGATTCCAAACTTAGTTCCTAAGGGCTGCAGCATGAGGATCATCGAGAACGCCAAAGACGAAATGCTCGGAGCCGTCATTTGTGCCTCCAAGGAAGCTGATATGAGGGCACGCGCACTCGCCAACCTGCAATTCAGTTGGATACTAGCAGGGATTCTTATACTTACTGGATTTATAAGCCTCAAATGTACTAAATCTGAAAATTGCAGCTCCAAGATCCAGTTAACCGACTACGAGCAGCTTTGA 2985 39.77 MIRFKILKLSSLNFNPITNSQSFAPFSSISLQKTPPESPFSSPNSTTNAPSPLTHHFLEQSARSSQWHFIKQVESTLTPSLISEALQNLHESPQIVLDLLNHLHHQLLDAETLCLAIVIVARLPSPKPTLQLLKQAVGCGTTNSISEIFELLAASRDRLGFKSCIVFDHLIKSCCEMNGVDEAFKCFYMMKEKGILPKIETCNDLLSLCLKLNRIEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLNKAKDFIGHMESLGVKPNVVTYNTIVHGYCSRGRVEGADAILNTMKRKNIQPDSYTYGSLISGMCKQGRLEEASKIFEEMVQIGLLPSAVTYNSLIDGFCNKGNLDMAFAYKDEMLKKGIMPTVSTYNLLIHALFMEQKIDEAEGMIKEIQEKGMSPDAITYNILINGYCRCGNAKKAFHLHDQMLVSGIRPTKVTYTSLIHVLSKKNRMREADDLFKKITSKGVLPDVIMFNALIDGHCSNGNVERAFELLKDMDRMKVPPDEVTFNTIMQGRCREGKVEEARELFNEMKRRGIKPDHVSFNTLISGYSRRGDIKDAFRVRDEMLDIGFNPTRLTYNSLIRGLCKNQEGDHAEELLKEMVSKGITPDDSTYFSLIEGDTINLSSPLVDKVRDHGPVKFVLISARTSRTLSFVFTFPCINDQIITIKEGTRDKIMKDFITDWKWILKSGSRKVQKLYSRVLKIEVSMGQFVPHVASGFVFTLLGLWHTVNTIKTYNLRGSSNFKVRFWYPLDRPLSKLKYLELVFVFSFSIIAIFRQFWYYPFVHLSFKVINFEHATMFLHLAIFSGFTLYNELNRSSNVLSGVEGVFAACVFSQELFLLHFHSADHNGIEGHYHWLLQLIVFASLVSVLVAACCPTNFPAALVLSLLVVLQGCWFMNMGFMLWIPNLVPKGCSMRIIENAKDEMLGAVICASKEADMRARALANLQFSWILAGILILTGFISLKCTKSENCSSKIQLTDYEQL 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5765226 5770405 + ClG42_02g0059100.10 Clacu02g0591 242659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Clacu02g0591 994 MobiDBLite consensus disorder prediction 34 53 - -
Clacu02g0591 994 Gene3D Tetratricopeptide repeat domain 362 436 IPR011990 GO:0005515(InterPro)
Clacu02g0591 994 SUPERFAMILY HCP-like 297 504 - -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Clacu02g0591 994 Pfam PPR repeat 167 195 IPR002885 -
Clacu02g0591 994 Pfam Family of unknown function (DUF716) 834 972 IPR006904 -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Clacu02g0591 994 Gene3D Tetratricopeptide repeat domain 249 361 IPR011990 GO:0005515(InterPro)
Clacu02g0591 994 Gene3D Tetratricopeptide repeat domain 528 631 IPR011990 GO:0005515(InterPro)
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Clacu02g0591 994 Coils Coil 383 403 - -
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Clacu02g0591 994 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 283 435 - -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 445 479 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 166 197 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 270 304 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 481 514 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 515 548 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 305 337 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 376 409 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 235 269 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 586 618 IPR002885 -
Clacu02g0591 994 NCBIfam pentatricopeptide repeat 550 582 IPR002885 -
Clacu02g0591 994 Pfam PPR repeat family 407 456 IPR002885 -
Clacu02g0591 994 Pfam PPR repeat family 547 596 IPR002885 -
Clacu02g0591 994 Pfam PPR repeat family 337 384 IPR002885 -
Clacu02g0591 994 Pfam PPR repeat family 267 316 IPR002885 -
Clacu02g0591 994 Pfam PPR repeat family 197 246 IPR002885 -
Clacu02g0591 994 Pfam PPR repeat family 477 523 IPR002885 -
Clacu02g0591 994 Gene3D Tetratricopeptide repeat domain 437 527 IPR011990 GO:0005515(InterPro)
Clacu02g0591 994 Gene3D Tetratricopeptide repeat domain 120 248 IPR011990 GO:0005515(InterPro)
Clacu02g0591 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0591 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0591 Clacu-Chr2:5765226 Clacu02g2435 Clacu-Chr2:37300084 6.30E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g524 . . . . . . . . Cmo19g00649 Cmo11g01332 . . . . Sed10g2064 Cpe04g00256 . Bhi05g01166 Tan02g0861 Cmetu01g0313 . Hepe02g0554 . . Cla02g00566 Cam02g0596 Cec02g0596 Cco02g0607 Clacu02g0591 Cmu02g0589 Cre02g0919 . . Cone3ag1124 Cone10ag1133 . Csa07g00812 . . Blo04g00497 . . . . . . . . . . Cma11g01778 Cma19g00634 Car11g01072 Car19g00483 . . . . . . . . . . . . . . . . Lsi11g01043 . Chy01g00017 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012024 0 1 1 0 0 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30