Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0594 ATGTGCCGGCGGGAAGGGTTTTTGTGGCAGTTCCGGCAGGTGTTGATCGTCTATTCGAATCGCTTCTCCGGAATTCGAGATACCGCTTTTGTGGAACTGGGTTACTCTTTTCTTCAGGATCTGATCGAGGAGGCTAAACTTCGAACGGTTTGGTGGGCTCTGTGTATTTTCGCGATTTCATACTTTTTGACCCATACTAGTAAGTCAATGTGGATGAATTTACCCCTAGCAATTCTATTAGTTTCTGCACTACGTATACTGTTCAATGAGGTAGAGTTCCGTAGAAAGGTCCGACCTATTCATCAACAGACATACTTATCTCACCTGGAGAAGAAGCAGTTATCTGTTAATGACTCGCGCCTGTCTTCAGCGCTTCCTCCACCAAGATGGAAAAGGAAAATTGATTCTCCTGCTGTGGAGGCTGCAATGAAGGATTTCATAGATAAAATATTGAAGGATTTTGTGGTTGACTTGTGGTATTCAGAAATAACCCCAGACAAGGAGTTTCCTGGGCAGATACATGCGCTGATCATGGACGCCCTTGGTGAGATAGCAGTTAGGGTGAAAGAGATAAACCTAGTTGACTTGCTCACGAGGGATGTTGTTGATCTAGTAGGTGACCACTTGGACCTTTTTAGAAGAAACCAAGCTGCCATCGGTGTTGATGTTATGGGAACGCTGTCTTCTGAGGAGAGAGATGAAAGGTTGAAACACCATCTTATGGCTTCGAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGAGTGTTGACTTCAGTACTGAGACCAAGAGAAACTCAATGTCCTGTTGTTCGATCCATTGCTCGAGAACTTTTAACATGCTTGGTGATGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAGTTGATCGAATGTATAGTCCTTGCCACTAGAGCTGAGAATGACTCGGTGATAGGCAGTCAACAACAAACTTATTCTACAGAGCATGACAAAGACCATTCTTCTACTGCTGGATTCGTGCATGATGAAGATTTGAACAAAAGGAACTCATCTTTAAATCCAGGGAATGGTTCAGAGCTCGCTAAAGTTAACAATAAAAAAGAAATAAGCTCAGATTACATGTTCCAGGATGAGCCTTTGCATCTGAGACATGGTGATTGGGGCCGTGCATTGAATGCAGCAACCCAAAGGAGAACTGAAGTTCTTATGCCTGAAAATCTTGAAAACATGTGGACTAAAGGACGGAATTATAAGAAGAAAGAAAATAAGATCATTAAAGTAGGAGATTCTGAGCCTATGGCTACAACAAAGAATTCTGGAACAGGTATCATGCAGCCTGCAACAACGAGGGAGGAAATGTTGACTGACAAGCATCATTCTTCTACTGGACCAGAAGAAAAGGCAATAGTTGGGAGAACACCTGTAAGACATTCTGATCTCCTTATGACATCCAAACCAAGTGATGAGAACAAAATTAGTTTTCAGTCTTCTCTGGAACTTCAGAAGGATTCATCTATCGATGGGAAGTTTATTGCTAATGTATTAAAGGATGTTGATAATCTTACTCCTGCTAGTGCAACTAAAACTCCACTCAAGAGATCCAATAGTACTTCTGCTTTGAAAACTGAAGTTAGTGTAGAAAAGACTTCTACAGAAGGTGGAAGATCAATCATATCAGATTTCTATGGTCCCAATTTTGGCAAGCATGGTGAAGAACCCCTTTCTAAGAGTGCCTCGGATATGTTGATCCAAAAAGAAGGACTACTTGTTCCCAAACTTAGGAGTCGGGTAATGGGTGCATACTTTGAGAAGCTTGGTTCAAAATCTTTTGCTGTGTATTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTACCGAAATTTTGAGCGCCTACATCGGCATCTTAAAGATATTCCTAACTATACACTGCACCTGCCTCCCAAACGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAACGTTGCATTCAACTTGACAAATATTTGCAGGAGCTATTATCAATTGCAAATGTTGCTGAGCAGCATGAAGTATGGGATTTTTTAAGTGTTTCCTCAAAGAACTATTCGTTTGGAAAATCTTCCTCAGTGATGAGAACATTAGCAGTCAATGTGGATGATGCCGTGGATGACATTGTACGTCAGTTTAAAGGGGTTTCAGATGGTTTCATGCGTAAAGTTGTTGGTTCAACCTCACCTGATGAAGCTTGTGCCTCATCAAATTATGACCGGAAGTTTTCATTTAATTCAGCAGACTTAAGCAGACATGTTTCTGCACAATATAATTTAGAGATAGCTAATAACATTTCTGACGAGGATGGTGAGCGAATTGAAAGTCAAAATCGTGAAAAGGTTAGTGGATGGCATTCAGACAATGAATTAAACTCTAAGAGCTTTCCCCCTCGTGTGATCAAACGTGGTGAAGAGTCAGATAAATTAGTTGTCGACAAGAAGAATGATCTAGAATTGAGGTCTGGGGCCAGCCATGGAGGATTTTCACAAACGTCGTATCATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTCAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAACAGGAGAGGCTGGATAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCTATTGATGACTGGATTGTCAGGCAAATACACTGGCTACGGAGGGAGGACATCATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTCTGGCCCAATGGAATATTCTTCATACAATTGAGGAATGCTCAAAGTGAAGATGATGATTCTCAATCTACTACTAGCCGAGCTGATGGAAGCAAGATCCCCAAGCCTGGATCTTTTGAGCTGCAGCTCGAGGCTGCTCGCAGAGCTAGCGATGTCAAGAAAATGCTTTTTGCTGGGGCTCCAACACCATTGGTAAGCTTGATAGGGCACAAGCAATACAAAAGATGTGCAAAAGATATTTACTACTTCACTCAGTCTACCATCTGTGTGAAGCAACTTGGGTATGGATTACTCGAACTATTACTCGTATCACTTTTCCCCGAGCTACGGAATTTAGTTTTGGAGATTCATGACAAGTCGCACGTCTCGCAACCAGTTTAG 3195 41.91 MCRREGFLWQFRQVLIVYSNRFSGIRDTAFVELGYSFLQDLIEEAKLRTVWWALCIFAISYFLTHTSKSMWMNLPLAILLVSALRILFNEVEFRRKVRPIHQQTYLSHLEKKQLSVNDSRLSSALPPPRWKRKIDSPAVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPGQIHALIMDALGEIAVRVKEINLVDLLTRDVVDLVGDHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLMASKELHPALVSPESEYKVLQRLMSGVLTSVLRPRETQCPVVRSIARELLTCLVMQPLMNFASPGCINELIECIVLATRAENDSVIGSQQQTYSTEHDKDHSSTAGFVHDEDLNKRNSSLNPGNGSELAKVNNKKEISSDYMFQDEPLHLRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYKKKENKIIKVGDSEPMATTKNSGTGIMQPATTREEMLTDKHHSSTGPEEKAIVGRTPVRHSDLLMTSKPSDENKISFQSSLELQKDSSIDGKFIANVLKDVDNLTPASATKTPLKRSNSTSALKTEVSVEKTSTEGGRSIISDFYGPNFGKHGEEPLSKSASDMLIQKEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANVAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDDAVDDIVRQFKGVSDGFMRKVVGSTSPDEACASSNYDRKFSFNSADLSRHVSAQYNLEIANNISDEDGERIESQNREKVSGWHSDNELNSKSFPPRVIKRGEESDKLVVDKKNDLELRSGASHGGFSQTSYHMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGIFFIQLRNAQSEDDDSQSTTSRADGSKIPKPGSFELQLEAARRASDVKKMLFAGAPTPLVSLIGHKQYKRCAKDIYYFTQSTICVKQLGYGLLELLLVSLFPELRNLVLEIHDKSHVSQPV 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5789777 5800380 - ClG42_02g0059400.10 Clacu02g0594 242662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0594 1064 Pfam Sorting nexin C terminal 890 1024 IPR013937 -
Clacu02g0594 1064 SMART PXA_3 136 319 IPR003114 -
Clacu02g0594 1064 MobiDBLite consensus disorder prediction 334 356 - -
Clacu02g0594 1064 MobiDBLite consensus disorder prediction 328 368 - -
Clacu02g0594 1064 SUPERFAMILY PX domain 606 703 IPR036871 GO:0035091(InterPro)
Clacu02g0594 1064 MobiDBLite consensus disorder prediction 532 556 - -
Clacu02g0594 1064 SMART PX_2 599 702 IPR001683 GO:0035091(InterPro)
Clacu02g0594 1064 Pfam PX domain 634 701 IPR001683 GO:0035091(InterPro)
Clacu02g0594 1064 MobiDBLite consensus disorder prediction 842 861 - -
Clacu02g0594 1064 PANTHER PX SERINE/THREONINE KINASE PXK 38 1059 IPR051837 -
Clacu02g0594 1064 Gene3D - 602 711 IPR036871 GO:0035091(InterPro)
Clacu02g0594 1064 ProSiteProfiles PXA domain profile. 136 319 IPR003114 -
Clacu02g0594 1064 Pfam PXA domain 136 313 IPR003114 -
Clacu02g0594 1064 ProSiteProfiles PX domain profile. 599 706 IPR001683 GO:0035091(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0594 K17925 - - csv:101222929 1854.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0594 Clacu-Chr2:5789777 Clacu09g0204 Clacu-Chr9:1902205 1.60E-129 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34