Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0627 ATGGCTGAGCCTCGGCCTTTACCAGCCCCGTTTGAATTCAAATCAAACTACGGAGCTCTCTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAAGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTCTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACAAGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCACTTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACAAAATACCTTGCCGATAAAACAGGTCTCAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGACAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTAGCAAAAGAAATACCAAATCATCAGGGCATAAATCCAGGGCAAATAATTCTGAGGATAAAGGAGATAATGGTGAGGATTCAGCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAAATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGCAAAAGTTAGCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTCTCATGGCGGTTCGGCGTGCTCGAACCCCTATTCTTATCTCCTCCTTCTTCAAGATACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGCCGCAACAACCTTCTTCGTCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAATAATCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGTTCAACAGGGAAGCCCCAGTAATCAATTGAAGTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATAGTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATTCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCAAGGTGCTCAAAATCAAGCACTAAATGCCCTTGTATCTCCTATTGACGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTTTCTAATAAGATATCGACACCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTGAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCACAGTGAACGATTGGCAATCGCATATGGATTGATCAGTACTCCGGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGCAGCTTGA 2880 43.02 MAEPRPLPAPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSSPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPIEPLPGIRRTYQRRDLLNRIYASQEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSSKRNTKSSGHKSRANNSEDKGDNGEDSADVSQLEKSGKKTTKSSGRKSRANKSKDKADNGADLDVPELEKSGKRITRSSSKGQKLAKQKGFRHFPIRNGVSHGGSACSNPYSYLLLLQDTLIKALSTSAIRNDFSNFPPPPQQPSSSDPRHRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYVQQGSPSNQLKYRSQNQSPQPNPGFSRQGQSYSQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVENSNQLNNQAGIQRQGAQNQALNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDAA 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6159661 6166582 + ClG42_02g0062700.10 Clacu02g0627 242695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0627 959 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 595 743 - -
Clacu02g0627 959 Pfam PPR repeat family 686 733 IPR002885 -
Clacu02g0627 959 MobiDBLite consensus disorder prediction 437 463 - -
Clacu02g0627 959 Gene3D Tetratricopeptide repeat domain 595 751 IPR011990 GO:0005515(InterPro)
Clacu02g0627 959 Coils Coil 57 84 - -
Clacu02g0627 959 MobiDBLite consensus disorder prediction 302 331 - -
Clacu02g0627 959 MobiDBLite consensus disorder prediction 276 380 - -
Clacu02g0627 959 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 686 720 IPR002885 -
Clacu02g0627 959 MobiDBLite consensus disorder prediction 423 463 - -
Clacu02g0627 959 CDD B3_DNA 177 268 IPR003340 GO:0003677(InterPro)
Clacu02g0627 959 Pfam B3 DNA binding domain 179 268 IPR003340 GO:0003677(InterPro)
Clacu02g0627 959 MobiDBLite consensus disorder prediction 85 133 - -
Clacu02g0627 959 MobiDBLite consensus disorder prediction 338 366 - -
Clacu02g0627 959 MobiDBLite consensus disorder prediction 475 567 - -
Clacu02g0627 959 SUPERFAMILY DNA-binding pseudobarrel domain 172 269 IPR015300 -
Clacu02g0627 959 Gene3D - 153 271 IPR015300 -
Clacu02g0627 959 ProSiteProfiles B3 DNA-binding domain profile. 179 270 IPR003340 GO:0003677(InterPro)
Clacu02g0627 959 SMART B3_2 179 270 IPR003340 GO:0003677(InterPro)
Clacu02g0627 959 PANTHER OS07G0578800 PROTEIN-RELATED 598 825 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Clacu02g0627 959 Pfam DYW family of nucleic acid deaminases 874 958 IPR032867 GO:0008270(InterPro)
Clacu02g0627 959 NCBIfam pentatricopeptide repeat 689 722 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0627 Clacu-Chr2:6159661 Clacu01g2579 Clacu-Chr1:36008372 3.30E-65 dispersed
Clacu03g1067 Clacu-Chr3:19225524 Clacu02g0627 Clacu-Chr2:6159661 4.80E-77 transposed
Clacu07g1378 Clacu-Chr7:28604068 Clacu02g0627 Clacu-Chr2:6159661 1.30E-120 transposed
Clacu02g0627 Clacu-Chr2:6159661 Clacu05g1152 Clacu-Chr5:10582382 6.50E-33 wgd
Clacu02g0627 Clacu-Chr2:6159661 Clacu08g1734 Clacu-Chr8:26807559 1.60E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47212 PF14432 DYW_deaminase 6.80E-33 CL0109 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0627 - - - 0.0