Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g0627 | ATGGCTGAGCCTCGGCCTTTACCAGCCCCGTTTGAATTCAAATCAAACTACGGAGCTCTCTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAAGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTCTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACAAGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCACTTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACAAAATACCTTGCCGATAAAACAGGTCTCAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGACAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTAGCAAAAGAAATACCAAATCATCAGGGCATAAATCCAGGGCAAATAATTCTGAGGATAAAGGAGATAATGGTGAGGATTCAGCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAAATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGCAAAAGTTAGCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTCTCATGGCGGTTCGGCGTGCTCGAACCCCTATTCTTATCTCCTCCTTCTTCAAGATACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGCCGCAACAACCTTCTTCGTCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAATAATCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGTTCAACAGGGAAGCCCCAGTAATCAATTGAAGTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATAGTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATTCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCAAGGTGCTCAAAATCAAGCACTAAATGCCCTTGTATCTCCTATTGACGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTTTCTAATAAGATATCGACACCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTGAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCACAGTGAACGATTGGCAATCGCATATGGATTGATCAGTACTCCGGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGCAGCTTGA | 2880 | 43.02 | MAEPRPLPAPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSSPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPIEPLPGIRRTYQRRDLLNRIYASQEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSSKRNTKSSGHKSRANNSEDKGDNGEDSADVSQLEKSGKKTTKSSGRKSRANKSKDKADNGADLDVPELEKSGKRITRSSSKGQKLAKQKGFRHFPIRNGVSHGGSACSNPYSYLLLLQDTLIKALSTSAIRNDFSNFPPPPQQPSSSDPRHRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYVQQGSPSNQLKYRSQNQSPQPNPGFSRQGQSYSQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVENSNQLNNQAGIQRQGAQNQALNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDAA | 959 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6159661 | 6166582 | + | ClG42_02g0062700.10 | Clacu02g0627 | 242695 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g0627 | 959 | FunFam | Pentatricopeptide repeat-containing protein, mitochondrial | 595 | 743 | - | - | |
Clacu02g0627 | 959 | Pfam | PPR repeat family | 686 | 733 | IPR002885 | - | |
Clacu02g0627 | 959 | MobiDBLite | consensus disorder prediction | 437 | 463 | - | - | |
Clacu02g0627 | 959 | Gene3D | Tetratricopeptide repeat domain | 595 | 751 | IPR011990 | GO:0005515(InterPro) | |
Clacu02g0627 | 959 | Coils | Coil | 57 | 84 | - | - | |
Clacu02g0627 | 959 | MobiDBLite | consensus disorder prediction | 302 | 331 | - | - | |
Clacu02g0627 | 959 | MobiDBLite | consensus disorder prediction | 276 | 380 | - | - | |
Clacu02g0627 | 959 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 686 | 720 | IPR002885 | - | |
Clacu02g0627 | 959 | MobiDBLite | consensus disorder prediction | 423 | 463 | - | - | |
Clacu02g0627 | 959 | CDD | B3_DNA | 177 | 268 | IPR003340 | GO:0003677(InterPro) | |
Clacu02g0627 | 959 | Pfam | B3 DNA binding domain | 179 | 268 | IPR003340 | GO:0003677(InterPro) | |
Clacu02g0627 | 959 | MobiDBLite | consensus disorder prediction | 85 | 133 | - | - | |
Clacu02g0627 | 959 | MobiDBLite | consensus disorder prediction | 338 | 366 | - | - | |
Clacu02g0627 | 959 | MobiDBLite | consensus disorder prediction | 475 | 567 | - | - | |
Clacu02g0627 | 959 | SUPERFAMILY | DNA-binding pseudobarrel domain | 172 | 269 | IPR015300 | - | |
Clacu02g0627 | 959 | Gene3D | - | 153 | 271 | IPR015300 | - | |
Clacu02g0627 | 959 | ProSiteProfiles | B3 DNA-binding domain profile. | 179 | 270 | IPR003340 | GO:0003677(InterPro) | |
Clacu02g0627 | 959 | SMART | B3_2 | 179 | 270 | IPR003340 | GO:0003677(InterPro) | |
Clacu02g0627 | 959 | PANTHER | OS07G0578800 PROTEIN-RELATED | 598 | 825 | IPR045215 | GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER) | |
Clacu02g0627 | 959 | Pfam | DYW family of nucleic acid deaminases | 874 | 958 | IPR032867 | GO:0008270(InterPro) | |
Clacu02g0627 | 959 | NCBIfam | pentatricopeptide repeat | 689 | 722 | IPR002885 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0627 | Clacu-Chr2:6159661 | Clacu01g2579 | Clacu-Chr1:36008372 | 3.30E-65 | dispersed | |
Clacu03g1067 | Clacu-Chr3:19225524 | Clacu02g0627 | Clacu-Chr2:6159661 | 4.80E-77 | transposed | |
Clacu07g1378 | Clacu-Chr7:28604068 | Clacu02g0627 | Clacu-Chr2:6159661 | 1.30E-120 | transposed | |
Clacu02g0627 | Clacu-Chr2:6159661 | Clacu05g1152 | Clacu-Chr5:10582382 | 6.50E-33 | wgd | |
Clacu02g0627 | Clacu-Chr2:6159661 | Clacu08g1734 | Clacu-Chr8:26807559 | 1.60E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47212 | PF14432 | DYW_deaminase | 6.80E-33 | CL0109 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g0627 | - | - | - | 0.0 |