Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0645 ATGCTCCTGCAACCAGAAGTTGTCATTCCTCAACCCATAACTTCGATGGTACCCACTCACGTCTCTGCTTCGACTCAAGGAGTCTCCGCGTCAGAAGGAGTCTCCACAGGCGCAAGCAGCAATGCCAGTGTGTCAGAAGTTACTACACAATCTGAGTCGCTGCTTTATGAAAAACGACTTGAACATCAAAACACCCATAAGAATGGGTTATTTGGAGGATCCACGTCTGTCAACGTAGACACAAGTAAAGGGTCGAACAATGGAGGTCCAAGGCAGTTTGCTCCAAATCAAGTTGGAAATCAGAACAATCGACGACCACAGTTTTCTGGAAGTTTTCCTATAAATCAGAATACAATCTCTTCGATTCAGCCTTCAAATCAGGCTTTCGTGGCAGCTCATAATTCAAATCCGTTTGTGTCAAGTCCTGAGTCTAGTATTGGTCCAAATGGCAGAGTGGTGCTAAAGGGGGAGCACCATGATGGGTTGTACAAGATTGAACCAATCGGGCCATTGGTAGTGCCTTCAAGCCAATTAGTAACAACAACGGCTGTTGGCTTTCACACTTTGGTTCCCAACACCACGAATATTAGATCTGGAGAAGAGGGAGAAGAAGATCAGATCAAATCTGAAGCTCCTTCTCCTTCGCTCACTTGGCGAAGCATAGCGACAATGGCCCTCGTTCTTCATTGGGTGCTGACTACGACAATGGGAAAGGCACGACGACGACGACGATCAGAGGGGCAAAAGAGTAATAACGCCCGATGTTATGAGGGCAAGATTGGAATAAAGCAACCTTCACCTCTTCGAGACTTTCTTCTTCTGCCTTTCTGCGTTGCTCTGCGGAATACGGGGGAAGAAGTACGTCATCGGCTCCGACGACCTTTAAACTGCCTTAGTTCGGCGACTCACGGTGGTCATTCGTGCCCTGGTTTACATCATCACCTAGCTATGGAGATTGCTCCGGCGGCTGCGCCTTCGATCGACAGAGATGCTGCCAACGATACCGCCTCTGTTGATGCAGTTCAAGCATCGTCTTCATCGCCGGATTCTGTACCAGGGAACAAGGCGAACTTGTCTACGTCTTTTCCTGGACCTAAGTATGATGACGATGAAGAGGAAGAGGACGTCTGCCGGATCTGTAGGAACCCTAGAGATGCGGATAACCCGCTAAGTTATCCCTGCGCTTGCAGCGGCAGCATCAAGTTTGTTCACCAGGATTGTCTCCTTCAATGGCTGAATCACAGCAACGCCCGTCAGTGCGAGGTTTGCAAACATGCATTTTCCTTCTCCCCTGTTTATGCCGAGAATGCTCCATCAAGGCTACCTTTTCAGGAATTTATTTTTGGAATAGCAATGAAAGCTTGCCATGTCCTGCAATTCTTTTTACGTTTAAGTTTTGTGCTCTCTGTTTGGCTCCTCATCATACCTTTCATTACATTTTGGATATGGCGGTTGGCTTTTGTGAGAAGTTTTGGGGAAGCTCAGAGATTATTCTTGAGTCACTTGTCTGCTACCGTTGTTCTTACTGATTGTCTTCATGGCTTCCTACTTTCTGCTAGCATTGTATTTATATTCCTTGGAGCTACCTCCTTGAGAGATTACTTCAGGCATTTACGGGAACTTGGAGGTCAGGATGGCGAGCGAGAAGATGATGCAGATCGAAATGGAGCTCGTGCGGTAAGAAGACCTCCGGGACAAGCTAATAGAAATTTTGCTGGTGACGCAAATGGTGAAGATGCGGGTGGAGCCCTAGTACTTGCTGGAGCAGGTCAAATGATTAGGAGGAATGCAGAAAATGTTGCTGCTCGATGGGAGATGCAGGCTGCTCGTCTTGAAGCTCACGTCGAACAGATGTTTGATGTGGATGATGCTGATGGTGCAGAAGATGTGCCCTTTGATGAGCTTGTTGGCATGCAGGGTCCTGTGTTTCACTTAGTTGAGAATGCATTCACAGTTTTAGCCAGCAATATGATATTTCTTGGTGTTGTTATCTTTGTGCCCTTTACACTAGGTCGGATCATACTTCATTACGTATCATGGCTTTTCTCTTCAGCCAGTGGTCCAGTTTTCTCAACAGTGATGCCACTTACAGAGTCAGCTCTCTCGTTGGCAAATATTACATTGAAAAATGCATTGACAGCTGTTGCAAATTTGTCATCAGATGGTAAAGAAAGTGGACTACTTGATCAGGTTGCAGAAATGTTGGAAGTCAACTCCAGTACGCTAAACAATGTCTCAAACAACATAACGGCTCCACTTTCGGTTGATCTTTTGAAAGGGGTAGCCACTGGAGGTTCGAGGCTTTCTGATGTTACAACTCTTGCTGTAGGCTACATATTTATATTTTCTTTAGTTTTCTTCTATCTTGGGACTATTGCTTTGATTCGATACACACGAGGAGAGCCTTTGACTATGGGGAGGTTGTATGGCATTGCATCTGTAGCCGAGGCCATCCCTTCTCTCCTTAGGCAGTTCATGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTATTGGTCATAGAACTTGGGGTATTCCCCTTGATGTGTGGTTGGTGGCTTGATATTTGTACTGTAAGGATGTTTGGAAAGTCAATGGCTCAGCGTGTTCAGTTCTTTTCAATTTCTCCTCTAGCAAGCTCATTGGTTCACTGGGCTGTTGGCATTGTATATATGCTACAAATAAGCATATTTGTCAATCTCCTCCGAGGGGTTTTGCGCAGTGGAGTTTTGTACTTTCTTCGCGATCCAGCTGACCCAAATTATAACCCTTTTCGAGATTTAATCGACGATCCTATGCACAAGCATGCTCGCAGGGTTCTTCTATCTGTCGCAGTGTATGGAAGTTTAATTGTAATGCTGGTGTTCTTACCTGTCAAACTTGCTATGAGGATGGTGCCCTCCATTTTTCCTCTTGATATATCGGTATCGGATCCCTTCACAGAGATTCCAGCTGACATGCTTCTGTTTCAAATATGCATTCCTTTTGCTATCGAGCATTTTAAATTGAGAACAACAATCAAATCCCTTCTTCACTGCTGGTTTACTGTAGTCGGTTGGGCCCTTGGTTTAACAGATTATTTACTTCCCAGAACTGAAGAAAATGTCGGCCAGGAAAATGGGAATGGAGAGCCTGGGTTGCAAGAAGAACTGCAGGTGGTACACCTAGGTGGACAGGATCAGGCTTTGGTGGCTCATAATGCAGCTAACGACCCAAATCAAGTTCCTGCATCTGGAAACTTGAGTAATGAGGAGTATGATAACGAAGAGCAGACTGATTCAGAGAGGTATAGCTTTGCTCTCCGGATTGTCCTTTTGTTGGTTGTGGCATGGATGACTCTTCTTGTCTTCAACTCAGCATTGATAGTGGTACCAACTTCACTTGGACGGGCACTTTTCAATGCCATTCCGCTTCTTCCCATCACACATGGAATCAAGTGCAATGATATGTATGCTTTTGTCATCGGGAGCTACGTTATTTGGACGGCAATAGCTGGTGCCAGATATTCCATTGAATATGTCAGAGCAAGGAGGGTGACAGTTTTGTTGGGCCAGATATGGAAATGGTTTGCCATTGTCGTCAAGAGTTCTGCACTTTTGTCAATTTGGATCTTTCTCATTCCAGTATTGATTGGCTTGTTATTTGAGCTTCTGGTCATCGTGCCTATGCGAGTTCCGGTGGATGAAAGCCCAGTTTTCCTCTTGTATCAGGATTGGGCATTGGGCTTAATTTTTCTTAAGATATGGACTAGACTGGTAATGTTAGATCATATGATACCACTGGTGGATGACAGTTGGAGGGTAAAGTTTGAAAGAGTTAGAGAAGATGGCTTCTCCAGGCTGCAAGGACTCTGGGTTCTGCGGGAAATAGTTGTGCCAATTATAATGAAGTTACTGACAGCACTATGCGTACCATATGTACTAGCTAGAGGAGTATTTCCCGTATTTGGGTACCCGCTGATCGTCAACTCGGCTGTTTATCGATTTGCTTGGATTGGATGCCTTTGTGTTAGCATGTTGTATTTCTGTGCCAAGAGATTTCATGTTTGGTTCACCAACCTTCACAATTCCATTCGCGACGATCGTTATCTCATTGGTCGTCGACTCCATAACTTCGGTGAAGACTCCGAAGAGAAGCAAACTGATGTGGGGACTTCATCCGAGACACAAAATGCACATCTGCTGGGCACCGGCCATGCAGCAGTGGCTGGTGAAGGATTGCGGCTGAGACGTGTGGTTGGTAACTGA 4257 45.5 MLLQPEVVIPQPITSMVPTHVSASTQGVSASEGVSTGASSNASVSEVTTQSESLLYEKRLEHQNTHKNGLFGGSTSVNVDTSKGSNNGGPRQFAPNQVGNQNNRRPQFSGSFPINQNTISSIQPSNQAFVAAHNSNPFVSSPESSIGPNGRVVLKGEHHDGLYKIEPIGPLVVPSSQLVTTTAVGFHTLVPNTTNIRSGEEGEEDQIKSEAPSPSLTWRSIATMALVLHWVLTTTMGKARRRRRSEGQKSNNARCYEGKIGIKQPSPLRDFLLLPFCVALRNTGEEVRHRLRRPLNCLSSATHGGHSCPGLHHHLAMEIAPAAAPSIDRDAANDTASVDAVQASSSSPDSVPGNKANLSTSFPGPKYDDDEEEEDVCRICRNPRDADNPLSYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPSRLPFQEFIFGIAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSATVVLTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDGEREDDADRNGARAVRRPPGQANRNFAGDANGEDAGGALVLAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDVDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRIILHYVSWLFSSASGPVFSTVMPLTESALSLANITLKNALTAVANLSSDGKESGLLDQVAEMLEVNSSTLNNVSNNITAPLSVDLLKGVATGGSRLSDVTTLAVGYIFIFSLVFFYLGTIALIRYTRGEPLTMGRLYGIASVAEAIPSLLRQFMAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDICTVRMFGKSMAQRVQFFSISPLASSLVHWAVGIVYMLQISIFVNLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHCWFTVVGWALGLTDYLLPRTEENVGQENGNGEPGLQEELQVVHLGGQDQALVAHNAANDPNQVPASGNLSNEEYDNEEQTDSERYSFALRIVLLLVVAWMTLLVFNSALIVVPTSLGRALFNAIPLLPITHGIKCNDMYAFVIGSYVIWTAIAGARYSIEYVRARRVTVLLGQIWKWFAIVVKSSALLSIWIFLIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMIPLVDDSWRVKFERVREDGFSRLQGLWVLREIVVPIIMKLLTALCVPYVLARGVFPVFGYPLIVNSAVYRFAWIGCLCVSMLYFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDSEEKQTDVGTSSETQNAHLLGTGHAAVAGEGLRLRRVVGN 1418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6419834 6429755 + ClG42_02g0064500.10 Clacu02g0645 242713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0645 1418 PANTHER SSM4 PROTEIN 343 1385 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 1073 1092 - -
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 332 370 - -
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 27 46 - -
Clacu02g0645 1418 Pfam RING-variant domain 377 423 IPR011016 GO:0008270(InterPro)
Clacu02g0645 1418 ProSiteProfiles Zinc finger RING-type profile. 377 424 IPR001841 -
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 545 575 - -
Clacu02g0645 1418 ProSiteProfiles Zinc finger RING-CH-type profile. 369 430 IPR011016 GO:0008270(InterPro)
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 337 361 - -
Clacu02g0645 1418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 435 IPR013083 -
Clacu02g0645 1418 SMART ringv_2 376 424 IPR011016 GO:0008270(InterPro)
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 67 119 - -
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 1073 1088 - -
Clacu02g0645 1418 FunFam Probable E3 ubiquitin ligase SUD1 363 435 - -
Clacu02g0645 1418 SUPERFAMILY RING/U-box 371 427 - -
Clacu02g0645 1418 Coils Coil 594 614 - -
Clacu02g0645 1418 CDD RING_CH-C4HC3_MARCH6 376 425 - -
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 65 119 - -
Clacu02g0645 1418 MobiDBLite consensus disorder prediction 193 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0645 K10661 - - csv:101222781 2098.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39