Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0665 ATGAAAATGGTCACATCCTCAGCTTTTGCATTTTTATCCATCTTTAATCTCCTCCTCTTCTCTTCCTTTTACGCTGTCGCTCTCGACATCAACATCGGTATTGGTATCGGCAACGGAAAAACTCCTCCGCCGTCCGAATCCTCTGATTGCAATACTTCTCCTCCACCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCACCGCCGCCGCCACCTCCTCCTCCTCCTCCTCCGCCACCGCCGCCGCGGGTAAAAAAGCCATCACCAACTCCCTCCCCAAAACCTCCTCGAAAACAGCCGCCGGCGCCGGCGTTGCAATTCGAGAGCGAGAGAATCAAAATTGCATTTGGTGTGATTAAAAAGTACAAAAGTAGAATCGAGAATGACCCATTGAATGTTATAAAAACATGGAATGGGCCAAACGTGTGCAAATACAGAGGATTCAGTTGCGACACAGTTCCCGGCTTCGGAAAACAGAGAGGAGTTTCGGGGCTTAGCTTCAACAATTTCAATTTCAGTGGTTCGAAGTTGACCCTGAATGGGCTTGTAGACCAGTTGCAGGATCTCACATTCTTCCATGCCAATTCAAACTTCTTCTTCTCCACTATCCCAAAGCTCATCTCCAAGGTCAAATTCTTTTACGAGCTGGATCTTAGCAATAACAACTTCAGGGGATCGTTCCCTGATGAAGTCCTCGGCGCCGTTAATCTGACGTTCTTGGATCTCCGGTTCAATAACTATTACGGTCCGGTTCGGTCCGAGCTGTTTGATATGGACATCATCACAGCTATCTTCCTCAACAACAATAAGTTTAATCACAACATTCCGGCCAACCTCGGCAACACCCCTGCTCGGTACCTCACATTCACGAGCAACGAGTTCACCGGCGAGATCCCAAAAAGCATCGGAATCGGAAAAACAAAGAAGAGTCTAATCGAAGTCCTCTTTTCCGACAACAAGCTTTCCGGTTGTTTACCAATGGAGATGGGTCTTCTAGAGAACACCGTTCTGTTGGACGCAAGCAAAAACTCCCTCACCGGCCCAATCCCATTCTCCTTCAGCTGCTTAACCAAAATGCAGATTCTCAATTTCTCCGACAACACCTTATACGGCGCCGTTCCAGAGGACGTCTGCAAGTTACGAAATCTCCAACAATTCACACTCCGCAACAACTTCTTCACCCAAGTCGGCCCCGTCTGCCGGAGCTTGATCTCCAAGAAAGTTCTAGACGTTTCTGGAAACTGCATTTTGGGTCTGCCGAAACAGAGACCGGAGAAGGAATGTACGAATTTCTTCAGTAAAGGTCATTCTTGTCCTGATGAGAAGTCTATGAAGATTATTCCTTGTAAGCCGCCGAATTTCGGCCGCCATCCACCGCCGCCCAGGAAGCTGACGGAGATGAGAACTTATGCTGCTCTTGTTCCTAATTGA 1431 48.71 MKMVTSSAFAFLSIFNLLLFSSFYAVALDINIGIGIGNGKTPPPSESSDCNTSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPRVKKPSPTPSPKPPRKQPPAPALQFESERIKIAFGVIKKYKSRIENDPLNVIKTWNGPNVCKYRGFSCDTVPGFGKQRGVSGLSFNNFNFSGSKLTLNGLVDQLQDLTFFHANSNFFFSTIPKLISKVKFFYELDLSNNNFRGSFPDEVLGAVNLTFLDLRFNNYYGPVRSELFDMDIITAIFLNNNKFNHNIPANLGNTPARYLTFTSNEFTGEIPKSIGIGKTKKSLIEVLFSDNKLSGCLPMEMGLLENTVLLDASKNSLTGPIPFSFSCLTKMQILNFSDNTLYGAVPEDVCKLRNLQQFTLRNNFFTQVGPVCRSLISKKVLDVSGNCILGLPKQRPEKECTNFFSKGHSCPDEKSMKIIPCKPPNFGRHPPPPRKLTEMRTYAALVPN 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6627565 6631773 - ClG42_02g0066500.10 Clacu02g0665 242733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0665 476 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 103 459 IPR051582 -
Clacu02g0665 476 Gene3D Ribonuclease Inhibitor 117 307 IPR032675 -
Clacu02g0665 476 MobiDBLite consensus disorder prediction 48 102 - -
Clacu02g0665 476 MobiDBLite consensus disorder prediction 39 106 - -
Clacu02g0665 476 Pfam Leucine Rich Repeat 215 230 IPR001611 GO:0005515(InterPro)
Clacu02g0665 476 PRINTS Proline rich extensin signature 80 96 - -
Clacu02g0665 476 PRINTS Proline rich extensin signature 59 80 - -
Clacu02g0665 476 PRINTS Proline rich extensin signature 47 59 - -
Clacu02g0665 476 FunFam Leucine-rich repeat receptor protein kinase EMS1 304 400 - -
Clacu02g0665 476 SUPERFAMILY L domain-like 128 418 - -
Clacu02g0665 476 Gene3D Ribonuclease Inhibitor 308 443 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0665 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0665 Clacu-Chr2:6627565 Clacu03g1641 Clacu-Chr3:30050741 6.30E-09 dispersed
Clacu02g0659 Clacu-Chr2:6568031 Clacu02g0665 Clacu-Chr2:6627565 3.70E-114 proximal
Clacu02g0665 Clacu-Chr2:6627565 Clacu05g1180 Clacu-Chr5:10861950 3.80E-78 wgd
Clacu02g0665 Clacu-Chr2:6627565 Clacu05g2212 Clacu-Chr5:30683815 6.30E-41 wgd
Clacu02g0665 Clacu-Chr2:6627565 Clacu08g1773 Clacu-Chr8:27152385 9.30E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90