Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0667 ATGACCCTTTCATCCATTCCTTCAAAACCACGGCGATTTTCAGTTTCTCCGCTCCAGCTCCCTCTCTCTGTTCCTTCCTCCCACCTTCGAAACCCTAAATCCACATCTCTCCTTGAAAATTTCGCACCCTTTTTCGCCTTGGATTGTTCGGCTATCGTTGTTTTTTTTCTGGCTTTCGTTGTCTGTAGTTTTGAGATAATGATGACAGCGGCAGGTCATATCATGGATCCAAATTCTACTGATTCCTCAACATCACCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACAGCCTCAGGCTCCTGCTACCACTGGAATGGATAATGTAACCCGTGATGCACCGTCTAAGCTATCTCCTAGTGGCATAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGACTGATAATGCTGCTGGGAAGTCAGCTTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCAAAATCTGCTGCTTCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGATTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTTGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTCTTTGAATCACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCACTTCAACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGCCTTCTTCTGTTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGATGTGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTACATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTTGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTATGTGGGGACTTCAAGGTTCATTTTCACGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTGTACACGAATGATCTTGATGGGTTTGACAAGAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTTGATACGTCGCCCAACATGGACAATACTACCAAGAAGTCGGATGAAAGCTCAGGCTCAAGACCTTCTGCAGCTGATGGAAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAACTTCAGGTTCAGGGAATGATGGATCAGCTGTCAAGCCGGCATCTAAATCTCAAACAAGTACGACTTCATCAGATGATGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCTCCCAGTGATCGAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGATTCCTTTGATTTGTACTCATTACTCAAGTCCTTGTGCTCTTGTTTCTTGCGTCAGTCAATGGCTTGAGTCTAAGCGTGAGCAACTGTCGAAGGAGACGCGGCATCGGCAATATAATTGCGAAAGAGAAGTTTCTGGGGATTCAATTTCTTCGCCCTCTACTCTCAACGATTTCTCAGGGAAGCTTCCGGAATCCGATTTGGTTCTTCTTTTGATTTCCTGGGTTACCATACTCTTTTGGATATTCTATTCTGCTTCTCTGAATTTGATTCAGTTTTTGTTTTGTGGGTTGTGCTCGAAATATTCTATTCTGGTTGGTTCCCTTCAGAAAAGGGGTCAACCTCTTGAAGTCACCGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCTTATGTGTGCCTTGAATATGGTAGTACAAAGTTTCGCACCACCACTTGCACAGATGGTGGAAGAAATCCCACATTCCAAGAGAAATTTGTGTTTTCTCTTATTGAAGGGCTAAGAGAGATTAATGTCACAGTTTGGAACAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATCCAATTGGCAAAAGTTCTGGCAGAAGGGTATGATGACAGTTCATGGTCACTTCAAACTAAAACTGGCAGACATGCTGGGGAAGTGCGACTGATCTTACATTTTGCAAATGCCAATAGACCGTCGTCAAGTTTTGCTCCCTCGGCACCACCATTTCATGCACCTACTCCACCCCAAGTCCCTGCATATGCTACGATGCCACCGGCACACCCGACAGCCTACCCTCCTCCTAGTGCTACACCGTATGCATCATTTCAATCTCCCTATCCTTCTTACCCACCCAGCTCTGGAGCATATCAAACATCCATGTACTCCCCATATCCATCTGGGTATCCTCCCACATCGTACCCGCTGCCTCCCTCGGGTTATCCTCCCAGTCCCTACCCACCACCTCCACAAGCCTCACCCTTCTATCCTCCAGGTCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGA 3102 44.0 MTLSSIPSKPRRFSVSPLQLPLSVPSSHLRNPKSTSLLENFAPFFALDCSAIVVFFLAFVVCSFEIMMTAAGHIMDPNSTDSSTSPTVNSSETKPPEVQPQAPATTGMDNVTRDAPSKLSPSGITSWAKNLKISQPQSASQDGTTDNAAGKSAFARFTSGLGLNLSPKSAASNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPLQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSRPSAADGSEVSENQNRKSGTNDRDDVFSDSESEGGSSKSKKEATSGSGNDGSAVKPASKSQTSTTSSDDVASLTHATKQVSLGDGGAKQTAPPSDRKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYEIPLICTHYSSPCALVSCVSQWLESKREQLSKETRHRQYNCEREVSGDSISSPSTLNDFSGKLPESDLVLLLISWVTILFWIFYSASLNLIQFLFCGLCSKYSILVGSLQKRGQPLEVTVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRHAGEVRLILHFANANRPSSSFAPSAPPFHAPTPPQVPAYATMPPAHPTAYPPPSATPYASFQSPYPSYPPSSGAYQTSMYSPYPSGYPPTSYPLPPSGYPPSPYPPPPQASPFYPPGPYPGVYPPPQY 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6651261 6663389 + ClG42_02g0066700.10 Clacu02g0667 242735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0667 1033 MobiDBLite consensus disorder prediction 78 121 - -
Clacu02g0667 1033 SMART PTEN_C2_2 403 531 IPR014020 -
Clacu02g0667 1033 MobiDBLite consensus disorder prediction 528 663 - -
Clacu02g0667 1033 MobiDBLite consensus disorder prediction 531 564 - -
Clacu02g0667 1033 CDD PTP_PTEN 229 394 IPR045101 GO:0016791(InterPro)
Clacu02g0667 1033 MobiDBLite consensus disorder prediction 996 1033 - -
Clacu02g0667 1033 ProSiteProfiles C2 domain profile. 784 898 IPR000008 -
Clacu02g0667 1033 SMART C2_3c 799 896 IPR000008 -
Clacu02g0667 1033 ProSiteProfiles Phosphatase tensin-type domain profile. 219 398 IPR029023 -
Clacu02g0667 1033 MobiDBLite consensus disorder prediction 588 628 - -
Clacu02g0667 1033 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 206 624 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Clacu02g0667 1033 ProSitePatterns Tyrosine specific protein phosphatases active site. 335 345 IPR016130 GO:0016311(InterPro)
Clacu02g0667 1033 MobiDBLite consensus disorder prediction 166 186 - -
Clacu02g0667 1033 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 333 372 IPR000387 GO:0016311(InterPro)
Clacu02g0667 1033 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 799 918 IPR035892 -
Clacu02g0667 1033 Gene3D C2 domain 798 918 IPR035892 -
Clacu02g0667 1033 CDD C2 800 897 - -
Clacu02g0667 1033 ProSiteProfiles C2 tensin-type domain profile. 405 532 IPR014020 -
Clacu02g0667 1033 Pfam C2 domain 800 895 IPR000008 -
Clacu02g0667 1033 Gene3D Protein tyrosine phosphatase superfamily 204 401 IPR029021 -
Clacu02g0667 1033 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 204 401 - -
Clacu02g0667 1033 Pfam PTEN2, C2 domain 406 532 - -
Clacu02g0667 1033 MobiDBLite consensus disorder prediction 565 587 - -
Clacu02g0667 1033 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 232 400 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0667 K01110 - - csv:101222304 1128.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1527 Clacu-Chr10:28575918 Clacu02g0667 Clacu-Chr2:6651261 3.20E-41 transposed
Clacu01g1774 Clacu-Chr1:29928768 Clacu02g0667 Clacu-Chr2:6651261 3.90E-190 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g608 . . . . . Bpe12g00295 . . Cmo19g00604 Cmo11g01385 . . . . . Cpe04g00297 Cpe15g00474 . . . . . . . Cla02g00626 Cam02g0659 Cec02g0663 Cco02g0686 Clacu02g0667 . Cre02g0980 . . Cone3ag0993 Cone10ag1014 Lsi03g00523 Csa07g00733 . Cme01g00075 . . . . . . . . . . . Cma11g01729 Cma19g00586 Car11g01111 . . . . . . . . . . . . . . . . . . . Chy01g00081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu09g1033 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.4e-122 436.4
Clacu06g1933 . 252 1147 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Clacu06g0577 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Clacu09g2109 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Clacu05g2338 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.1e-116 414.1
Clacu07g0502 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.4e-98 354.0
Clacu10g1408 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Clacu02g1854 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Clacu09g1115 . 25 231 Protein tyrosine phosphatase (PTP) family AT2G32960 64.0 9.8e-73 270.4
Clacu03g1046 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Clacu10g0242 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.9e-101 365.5
Clacu11g0342 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Clacu11g0342 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Clacu10g0242 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Clacu02g1854 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Clacu09g1115 . 34 232 Protein tyrosine phosphatase (PTP) family AT4G03960 63.8 2.3e-69 258.8
Clacu03g1046 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Clacu03g1046 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Clacu02g1854 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Clacu07g0292 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu02g0667 . 82 685 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Clacu01g1774 . 115 671 Protein tyrosine phosphatase (PTP) family AT3G19420 58.2 4.8e-187 651.4
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu02g2250 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 7.9e-70 260.8
Clacu10g0180 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Clacu04g0781 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Clacu04g0781 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.9e-258 888.6
Clacu04g0781 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 3.9e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83