Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0668 ATGGCTTTGCACTCAAATAAACTCAGAACCCAACGCCTCCATAACTCTCTCTTCTTCTTCGACTTCTTCCACTGCACTGAACAACAACACCTTCAAACAGAGCATCCCATTTTCCTCAACAATGGCGGCACCAACAACTTCCCCTTTTTCCAAGAAACAACCCATTTCCATATTTACGAAGACGAGGAGCTCAATCATTTGTTGTCCAAAGAAAAAGACCAGAATCTCCAAGCCGGCGCCGTTTTGAAAACCTTGGTTCAAACAGATAATGCTTTGTCTCTCGCTAGAACAGAGGCCATCGACTGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCCTCTCTCACAGCTCTCTTAGCAATTAATTACCTCGATAGAATCCTCTCTGGCCCCCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCTGTAACTTGCATCTCTTTAGCTGCTAAAGTCGAAGAAATTCGTGTCCCGCTTCTTCTAGATCTCCAGGTGGAAGATTCAAAGTACATTTTTGAAGCGAAAACGATACAGAGAATGGAGCTTTTGGTGCTTACTGCTCTGCAATGGAAGATGCATCCAGTGACCCCTGTTTCGTTTATTGGCATTATCACAAAAGGGCTTGGAATGAAGAATCAGTACATTCAAAGAGAGTTTCTTAGACGTTGTGAGCGTCTTCTCCTCTCTCTTGTCTCTGATTCGAGGTCGGTGGGGATTCTTCCTTCTGTAATGGCGGTATCAGCAATGGTGAGCGTTGTTGAAGAGATGGGAAGCTGTAACCCATTGGAGGAGTTTCAGGATCAGCTTCTTAATGCCCTCAAAATAAATAAGGGGAGAGTGAAGGAGTGTTGTAAAGTGATAATGGAGGCAAAAGCCAAAGGATCAGGGAAAAGGAAGCATGTGGAGGAGGAAGCAGAATCAGAAGCAGAAGCAGAATCATCAGAAGCAGAAACAGAGGAAGAAGCAGAAGCAGGGAGTCCAAATGGAGTAATGGAGGCTAATTTCAGCTGTGAAAGCTCCAATGATTCGTGGGAAATGGGGTCGATTGTGTCAGAGTACACACATTTCTCTTCTTCTTCTTCTTCCAAAAGAATCAGACCCACTCGATGA 1119 44.06 MALHSNKLRTQRLHNSLFFFDFFHCTEQQHLQTEHPIFLNNGGTNNFPFFQETTHFHIYEDEELNHLLSKEKDQNLQAGAVLKTLVQTDNALSLARTEAIDWLLKVNAFYGFSSLTALLAINYLDRILSGPHFQRDKPWMLQLLAVTCISLAAKVEEIRVPLLLDLQVEDSKYIFEAKTIQRMELLVLTALQWKMHPVTPVSFIGIITKGLGMKNQYIQREFLRRCERLLLSLVSDSRSVGILPSVMAVSAMVSVVEEMGSCNPLEEFQDQLLNALKINKGRVKECCKVIMEAKAKGSGKRKHVEEEAESEAEAESSEAETEEEAEAGSPNGVMEANFSCESSNDSWEMGSIVSEYTHFSSSSSSKRIRPTR 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6681708 6684075 + ClG42_02g0066800.10 Clacu02g0668 242736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0668 372 CDD CYCLIN_AtCycD-like_rpt2 198 290 - -
Clacu02g0668 372 Pfam Cyclin, C-terminal domain 198 314 IPR004367 -
Clacu02g0668 372 Pfam Cyclin, N-terminal domain 67 195 IPR006671 -
Clacu02g0668 372 Coils Coil 300 325 - -
Clacu02g0668 372 SUPERFAMILY Cyclin-like 53 196 IPR036915 -
Clacu02g0668 372 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Clacu02g0668 372 SMART cyclin_7 101 189 IPR013763 -
Clacu02g0668 372 SMART Cyclin_C_2 198 318 IPR004367 -
Clacu02g0668 372 MobiDBLite consensus disorder prediction 298 345 - -
Clacu02g0668 372 MobiDBLite consensus disorder prediction 310 325 - -
Clacu02g0668 372 Gene3D - 77 196 - -
Clacu02g0668 372 FunFam D6-type cyclin 79 196 - -
Clacu02g0668 372 ProSitePatterns Cyclins signature. 96 127 IPR048258 -
Clacu02g0668 372 Gene3D - 65 288 - -
Clacu02g0668 372 PANTHER CYCLINS 59 260 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0668 Clacu-Chr2:6681708 Clacu08g1308 Clacu-Chr8:23029273 2.90E-33 dispersed
Clacu01g1776 Clacu-Chr1:29953695 Clacu02g0668 Clacu-Chr2:6681708 3.40E-57 wgd
Clacu02g0668 Clacu-Chr2:6681708 Clacu05g1182 Clacu-Chr5:10889775 1.60E-68 wgd
Clacu02g0668 Clacu-Chr2:6681708 Clacu05g2220 Clacu-Chr5:30740319 2.00E-58 wgd
Clacu02g0668 Clacu-Chr2:6681708 Clacu08g1775 Clacu-Chr8:27172861 3.30E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0668 K14505 - csv:101222066 554.673